BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB06FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1610 0.0
>3x_Contig1668
Length = 13429
Score = 1610 bits (812), Expect = 0.0
Identities = 852/864 (98%), Gaps = 2/864 (0%)
Strand = Plus / Plus
Query: 84 atttcatgggtatgttacttagttcgaatgctacgtacgatgcctccttttggatggctt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 atttcatgggtatgttacttagttcgaatgctacgtacgatgcctccttttggatggctt 2403
Query: 144 tgggtatttcttttggttattgcaccttctctttttataagtccatatttaaggttaaaa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 tgggtatttcttttggttattgcaccttctctttttataagtccatatttaaggttaaaa 2463
Query: 204 tggatcttaaataactanggatcagaacttactttgttatgcttagccaaaagtcaaaag 263
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 tggatcttaaaaaacaatggatcagaacttactttgttatgcttagccaaaagtcaaaag 2523
Query: 264 tcagtagtggttcatgacaacaccaatctatcaacatgtcattacctgaattaccgccta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 tcagtagtggttcatgacaacaccaatctatcaacatgtcattacctgaattaccgccta 2583
Query: 324 ggccagatcgtccaaagtctaccgaatcactccattgctccgatgttgagctacctcaaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2584 ggccagatcgtccaaagtctaccgaatcactccattgctccgatgttgagctacctcaaa 2643
Query: 384 atgtggatcttttgacctttaacgacattcaacagttacttcagcaacaggatatgccta 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 atgtggatcttttgacctttaacgacattcaacagttacttcagcaacaggatatgccta 2703
Query: 444 aagaatacgcaaaacgcttcaatgataacttagttcaggatatttcaaataaatccgtgg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2704 aagaatacgcaaaacgcttcaatgataacttagttcaggatatttcaaataaatccgtgg 2763
Query: 504 cgtggaaagcacaagctgaacagttaatagaagggttgaataaattagctgaaaataagc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 cgtggaaagcacaagctgaacagttaatagaagggttgaataaattagctgaaaataagc 2823
Query: 564 gtcatttgaagggagaattagattcctttaagaagcttgaattcgaatacatgaaaaaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2824 gtcatttgaagggagaattagattcctttaagaagcttgaattcgaatacatgaaaaaat 2883
Query: 624 ggcaagatcttgatcttctgatcaatagcaaattcagcaacgatgcgctaaagaagcaac 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 ggcaagatcttgatcttctgatcaatagcaaattcagcaacgatgcgctaaagaagcaac 2943
Query: 684 tgcgacacaatgtgatcaatctggatgaaaaatcttctcatatggttaacgaagtgcctg 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2944 tgcgacacaatgtgatcaatctggatgaaaaatcttctcatatggttaacgaagtgcctg 3003
Query: 744 ttactgacgaatctcttgacctgttttttggacaatatgttaatgagcgcacagaatatc 803
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 3004 ttactgacgaatctcttgacctgtttttggaacaatatgttaatgagcgcacagaatatc 3063
Query: 804 acctacagcgagaanaatttgcaacatgggaaccacangatactttgagatt-ccatgag 862
|||||||||||||| |||| ||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 3064 acctacagcgagaaaaattggcaacatgggaacaacaggatactttgagattaccatgag 3123
Query: 863 tgtagngcattattgattattgatgttattatgt-aaatacatagattttgatttttaag 921
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3124 tgtagtgcattattgattattgatgttattatgtaaaatacatagattttgatttttaag 3183
Query: 922 agtgtattaagcattaaatcgtgt 945
||||||||||||||||||||||||
Sbjct: 3184 agtgtattaagcattaaatcgtgt 3207
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6142
Number of Sequences: 1807
Number of extensions: 6142
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)