BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB06RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1356 0.0
>3x_Contig1719
Length = 15804
Score = 1356 bits (684), Expect = 0.0
Identities = 701/704 (99%), Gaps = 2/704 (0%)
Strand = Plus / Minus
Query: 43 gcttgcagcatatttgagtgatactcactcaaattacaaccaataggagaacca-tgggc 101
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 704 gcttgcagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggc 645
Query: 102 gttaataacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gttaataacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattg 585
Query: 162 ggccaatttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgca 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggccaatttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgca 525
Query: 222 caatacaatttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaaggg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caatacaatttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaaggg 465
Query: 282 catgtaaaaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 catgtaaaaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgt 405
Query: 342 caacgagttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caacgagttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaag 345
Query: 402 cgtctttgtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cgtctttgtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaa 285
Query: 462 ataaaaaacacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ataaaaaacacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttag 225
Query: 522 agcgtatacagcgaataagaaagcaaataacaatcaatatattttccccctagagagtca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agcgtatacagcgaataagaaagcaaataacaatcaatatattttccccctagagagtca 165
Query: 582 tgtcgttcaaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaac 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tgtcgttcaaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaac 105
Query: 642 tgaacatgggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaagg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tgaacatgggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaagg 45
Query: 702 aattggaatcgg-aaacgaagaagttgagcgatgagtcaaagag 744
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 44 aattggaatcggaaaacgaagaagttgagcgatgagtcaaagag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7460
Number of Sequences: 1807
Number of extensions: 7460
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)