BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZB07FM1.SCF screened BAC_end
         (898 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1663                                                        1511   0.0  
3x_Contig555                                                          541   e-154

>3x_Contig1663 
          Length = 13533

 Score = 1511 bits (762), Expect = 0.0
 Identities = 805/814 (98%), Gaps = 4/814 (0%)
 Strand = Plus / Plus

                                                                         
Query: 85    tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 144
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11869 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 11928

                                                                         
Query: 145   tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 204
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11929 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 11988

                                                                         
Query: 205   tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11989 tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 12048

                                                                         
Query: 265   gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12049 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 12108

                                                                         
Query: 325   ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12109 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 12168

                                                                         
Query: 385   aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12169 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 12228

                                                                         
Query: 445   ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 504
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12229 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 12288

                                                                         
Query: 505   gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 564
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12289 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 12348

                                                                         
Query: 565   tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 12408

                                                                         
Query: 625   tttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgt 684
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409 tttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgt 12468

                                                                         
Query: 685   tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 744
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12469 tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 12528

                                                                         
Query: 745   taccgcaggtcaagaaaaattc-gtggtctaagagatggttattatatcaatgctcaatg 803
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12529 taccgcaggtcaagaaaaattcggtggtctaagagatggttattatatcaatgctcaatg 12588

                                                                         
Query: 804   tggtatcattaatgtttgatgtgactttcagaatcacctacaagaacggttcaaaactgg 863
             |||||||||| |||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 12589 tggtatcatt-atgtttgatgtgacttccagaatcacctacaagaac-gttccaaactgg 12646

                                               
Query: 864   cccaaagatttggttcggtgtttgtggaaacatt 897
             | || ||||||||||| ||||||||| |||||||
Sbjct: 12647 cacagagatttggttc-gtgtttgtgaaaacatt 12679


>3x_Contig555 
          Length = 1912

 Score =  541 bits (273), Expect = e-154
 Identities = 316/325 (97%), Gaps = 4/325 (1%)
 Strand = Plus / Minus

                                                                        
Query: 574  tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 1849

                                                                        
Query: 634  gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1848 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 1789

                                                                        
Query: 694  tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1788 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 1729

                                                                        
Query: 754  tcaagaaaaattc-gtggtctaagagatggttattatatcaatgctcaatgtggtatcat 812
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1728 tcaagaaaaattcggtggtctaagagatggttattatatcaatgctcaatgtggtatcat 1669

                                                                        
Query: 813  taatgtttgatgtgactttcagaatcacctacaagaacggttcaaaactggcccaaagat 872
            | |||||||||||||||| ||||||||||||||||||| |||| |||||||| || ||||
Sbjct: 1668 t-atgtttgatgtgacttccagaatcacctacaagaac-gttccaaactggcacagagat 1611

                                     
Query: 873  ttggttcggtgtttgtggaaacatt 897
            ||||||| ||||||||| |||||||
Sbjct: 1610 ttggttc-gtgtttgtgaaaacatt 1587


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,600
Number of Sequences: 1807
Number of extensions: 15600
Number of successful extensions: 447
Number of sequences better than 1.0e-20: 2
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)