BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB07RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1610 0.0
>3x_Contig1654
Length = 17174
Score = 1610 bits (812), Expect = 0.0
Identities = 844/853 (98%), Gaps = 2/853 (0%)
Strand = Plus / Minus
Query: 46 gctttaatgacccgcttctgtcatctgtatagtacaaccacacaaaaccagaatatattt 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8675 gctttaatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatattt 8616
Query: 106 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 8556
Query: 166 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttctt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttctt 8496
Query: 226 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 8436
Query: 286 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 8376
Query: 346 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 8316
Query: 406 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 8256
Query: 466 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 8196
Query: 526 cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8195 cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 8136
Query: 586 tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8135 tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 8076
Query: 646 tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 8016
Query: 706 gattttcgcanagcagttttcaatttcttacggagtttcatgacatcttcttctgttcta 765
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8015 gattttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgttcta 7956
Query: 766 gcctncaacatttgcatttgagcttgagcatcaatcagcttttgggaaaaggtctttttt 825
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7955 gcctccaacatttgcatttgagcttgagcatcaatcagcttttgggaaa-ggtctttttt 7897
Query: 826 t-catcttgtanaacttctatccgagattcatatttcatccgttgtgtatgccatcttgc 884
| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7896 ttcatcttgtaaaacttctatccgagattcatattcaatccgttgtgtatgccatcttgc 7837
Query: 885 tgaattttcctct 897
|||||||||||||
Sbjct: 7836 tgaattttcctct 7824
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,366
Number of Sequences: 1807
Number of extensions: 13366
Number of successful extensions: 1710
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)