BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB08RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1667 0.0
>3x_Contig1787
Length = 34189
Score = 1667 bits (841), Expect = 0.0
Identities = 875/881 (99%), Gaps = 4/881 (0%)
Strand = Plus / Plus
Query: 43 gctttgatttcttgccgatttttgtcatttctaccgatgatgacattttctagctgggtt 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22290 gctttgatttcttgccgatttttg-catttctaccgatgatgacattttctagctgggtt 22348
Query: 103 tcatcatcaatttcaacattatcaagcacaacacacccaacgatacggcatcgctttcct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22349 tcatcatcaatttcaacattatcaagcacaacacacccaacgatacggcatcgctttcct 22408
Query: 163 actttacaattgtcaccgaggaccgaacgtttaatattggttttctccaaaattgctcaa 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 22409 actttacaattgtcaccgaggaccgaacgtttaatattggttttctccaaaattgcacaa 22468
Query: 223 ttgttaccaaccatagaatctgcaccgatagcagaagaaccatcagtagtgcgttgttga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22469 ttgttaccaaccatagaatctgcaccgatagcagaagaaccatcagtagtgcgttgttga 22528
Query: 283 atcgccgtttgtttaatcttcaaaacgtacctattggattccatgtatgcactcaaactg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22529 atcgccgtttgtttaatcttcaaaacgtacctattggattccatgtatgcactcaaactg 22588
Query: 343 tttgatctgataaataatccgatttcaggtaacacgaagatacctatagtttctctgggt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22589 tttgatctgataaataatccgatttcaggtaacacgaagatacctatagtttctctgggt 22648
Query: 403 ttcacatgctgccacgaacgcctagacaaatccctgaatagcttgcctagcgatttatta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22649 ttcacatgctgccacgaacgcctagacaaatccctgaatagcttgcctagcgatttatta 22708
Query: 463 cagtttattggatctttgattaatttcttctttcccttcaagaaagacgtgttctggaat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22709 cagtttattggatctttgattaatttcttctttcccttcaagaaagacgtgttctggaat 22768
Query: 523 gatgtggccaaagaatcaacggcttccgaatcagagtctaattctccagcacctttctcg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22769 gatgtggccaaagaatcaacggcttccgaatcagagtctaattctccagcacctttctcg 22828
Query: 583 gtttcatccttcaataggtttactaactcatgagagcaaaagtaaatgaag-gagttcag 641
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 22829 gtttcatccttcaataggtttactaactcatgagagcaaaagtaaatgaagagagttcag 22888
Query: 642 taattttgtggatacagaggagttcggatatctccaaagcatttgggatctgatttgtaa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22889 taattttgtggatacagaggagttcggatatctccaaagcatttgggatctgatttgtaa 22948
Query: 702 atatttcgttttgtccacatcgtctttggaataaacgtctagaagaacgggcttactaac 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22949 atatttcgttttgtccacatcgtctttggaataaacgtctagaagaacgggcttactaac 23008
Query: 762 agactccaaattctcggagtatacagtcaggaattgctttaaatgcttcttatcgatatt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23009 agactccaaattctcggagtatacagtcaggaattgctttaaatgcttcttatcgatatt 23068
Query: 822 ctcaaacccattgtgataatatactgccatagctagattcttcggatctttattc-aata 880
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 23069 ctcaaacccattgtgataatatactgccatagctagattctccggatctttattcaaata 23128
Query: 881 ctgatct-aaaacacctgtggtggaatgtctgtgatgaaat 920
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23129 ctgatctaaaaacacctgtggtggaatgtctgtgatgaaat 23169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7154
Number of Sequences: 1807
Number of extensions: 7154
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)