BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB09RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig551 1582 0.0
>3x_Contig551
Length = 2723
Score = 1582 bits (798), Expect = 0.0
Identities = 889/908 (97%), Gaps = 9/908 (0%)
Strand = Plus / Minus
Query: 42 cttccgaattatttgaagaagcttgtaagatcgatccaagatccgaacaagccaagatcg 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2456 cttccgaattatttgaagaagcttgtaagatcgatccaagatccgaacaagccaagatcg 2397
Query: 102 gtcttgctcaactaaaattgcaacaagaagaaattgatgatgccattcaattgttcgaag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2396 gtcttgctcaactaaaattgcaacaagaagaaattgatgatgccattcaattgttcgaag 2337
Query: 162 atgctgtcgatctctcaagatctttcgatgaaaaactacaagctactactttcgctgagg 221
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2336 atgctgccgatctctcaagatctttcgatgaaaaactacaagctactactttcgctgagg 2277
Query: 222 ctaccaaggtccagaaaaagatcagagctgatccattcattaagggtaagatcgacgaag 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 ctaccaaggtccagaaaaagatcagagctgatccattcattaagggtaagatcgacgaag 2217
Query: 282 ctattgcagcctaccgtgctcaaggtctcgcgtaaattagcatgatattcacgaatgaat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2216 ctattgcagcctaccgtgctcaaggtctcgcgtaaattagcatgatattcacgaatgaat 2157
Query: 342 ttaattcatttcaatatgagtaaagctacaatagctcattgtttttgtctcaccttaatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2156 ttaattcatttcaatatgagtaaagctacaatagctcattgtttttgtctcaccttaatg 2097
Query: 402 accataatggcaacataccatgcaacatctaaacgaatgaattaccaagaaagttatgat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2096 accataatggcaacataccatgcaacatctaaacgaatgaattaccaagaaagttatgat 2037
Query: 462 tttacaaacaaaaagttgtagcatttcacccaagttatttatgactcgtaagcagcgtga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2036 tttacaaacaaaaagttgtagcatttcacccaagttatttatgactcgtaagcagcgtga 1977
Query: 522 actgtgttaat-cgtaaacgacaagatctcaacattacaacgtgaagaataagaaatagt 580
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 actgtgttaatgcgtaaacgacaagatctcaacattacaacgtgaagaataagaaatagt 1917
Query: 581 tatcaattcttcacaaaaacaagacaaaaagaaacacagaagaacaagaatacgagaaca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 tatcaattcttcacaaaaacaagacaaaaagaaacacagaagaacaagaatacgagaaca 1857
Query: 641 acgcttttcaataacagctcattgcaaaatatgtgctcctaaatacccctggttcaaaaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 acgcttttcaataacagctcattgcaaaatatgtgctcctaaatacccctggttcaaaaa 1797
Query: 701 catcatcttctaccattttgctagaaacaaatacgtctttctgtatatacatgtatctcc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 catcatcttctaccattttgctagaaacaaatacgtctttctgtatatacatgtatctcc 1737
Query: 761 cccatctcacaatttaatcaaattgtaattttaaacacttcgatagtatatca-ctacat 819
|||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1736 cccatctcacaagttaatcaaattgtaattttaaacacttcgatagtatattatttacat 1677
Query: 820 acgtttcaacataaatgacattntttgttttctctgaaag-agtgtatggtataaaag-t 877
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
Sbjct: 1676 acgtttcaacataaatgacattttttgttttctctgaaagaagtgtatgtaataaaagtt 1617
Query: 878 tcttgtg-aga-tatggncaggtactgagtgaaa-agagctacaattc-agtacttca-t 932
||||||| ||| ||||| ||||||||||||||| |||||||||||| ||||||||| |
Sbjct: 1616 tcttgtgtagattatggcaaggtactgagtgaaagtgagctacaattcaagtacttcatt 1557
Query: 933 gttaacgg 940
||||||||
Sbjct: 1556 gttaacgg 1549
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8438
Number of Sequences: 1807
Number of extensions: 8438
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)