BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB11FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1576 0.0
>3x_Contig1744
Length = 24119
Score = 1576 bits (795), Expect = 0.0
Identities = 821/827 (99%), Gaps = 2/827 (0%)
Strand = Plus / Minus
Query: 86 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15913 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 15854
Query: 146 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15853 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 15794
Query: 206 agttcaacatgtttttaactggtgatattcatgcaatcggtgctgctaataacttactag 265
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15793 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 15734
Query: 266 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15733 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 15674
Query: 326 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15673 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 15614
Query: 386 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15613 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 15554
Query: 446 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15553 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 15494
Query: 506 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 15434
Query: 566 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15433 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 15374
Query: 626 ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactacg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15373 ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactacg 15314
Query: 686 aaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttctaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15313 aaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttctaa 15254
Query: 746 aggatgccgtaaagcctaacctgatgcatacgcttgaagggacaccagttttggttcatg 805
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 15253 aggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccagttttggttcatg 15194
Query: 806 ctggtccatttgcaaacatctctattggcgcttcatcagttattgctgacagatttgctt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 15193 ctggtccatttgcaaacatctctattggcgcttcatcagttattgctgacagagttgctt 15134
Query: 866 tgaaacttgtaggt-agccaaaagaa-ctgacgagagtgcagaatct 910
|||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 15133 tgaaacttgtaggtaagccaaaagaagctgacgagagtgcagaatct 15087
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5338
Number of Sequences: 1807
Number of extensions: 5338
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)