BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZB11RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1286                                                        1629   0.0  

>3x_Contig1286 
          Length = 5608

 Score = 1629 bits (822), Expect = 0.0
 Identities = 868/878 (98%), Gaps = 4/878 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttcctcgtcatcacttaatgctgatattgataagccactattctcaatttcatctaaa 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 gcttcctcgtcatcacttaatgctgatattgataagccactattctcaatttcatctaaa 2497

                                                                        
Query: 104  agacgagattgggatcttttaaaagtttgagtctgaggctgagaagccggctcattgtcc 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 agacgagattgggatcttttaaaagtttgagtctgaggctgagaagccggctcattgtcc 2557

                                                                        
Query: 164  gattctatcgcggtatcattttggaatctgccctccacttctaaggaaaagttgtcactc 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 2558 gattctatcgcggtatcattttggaatctgccctccacttctaaggaaaagctgacactc 2617

                                                                        
Query: 224  acactattctcaagcagcaccacgtcatcatcctctacattacgttgtcccaccgaatcg 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2618 acactattctcaagcagcaccacgtcatcatcctctacattacgttgtcccaccgaatcg 2677

                                                                        
Query: 284  ctgagtgacctagccaaagagtaatggattggatccgaagctggcggtccttctctttcc 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2678 ctgagtgacctagccaaagagtaatggattggatccgaagctggcggtccttctctttcc 2737

                                                                        
Query: 344  ccttctgatgaaattagtaccacaacaccgttcgcagttccttcattacccactaaagac 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2738 ccttctgatgaaattagtaccacaacaccgttcgcagttccttcattacccactaaagac 2797

                                                                        
Query: 404  tgctctgtagtatcattgatatcaatgatattcacttcatccatttgactatcagtataa 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2798 tgctctgtagtatcattgatatcaatgatattcacttcatccatttgactatcagtataa 2857

                                                                        
Query: 464  ccaaggggcagttgtctatttctatcctatgttaatgattcagttattgtttggcttcga 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2858 ccaaggggcagttgtctatttctatcctatgttaatgattcagttattgtttggcttcga 2917

                                                                        
Query: 524  gagctctgtttacctttttaatggattttaactggttttcaaagaaggtttcgcgtaagt 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2918 gagctctgtttacctttttaatggattttaactggttttcaaagaaggtttcgcgtaagt 2977

                                                                        
Query: 584  gatgagtctaatctgatagtatgatacaacgagatataaccagatatagcctcagttttt 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2978 gatgagtctaatctgatagtatgatacaacgagatataaccagatatagcctcagttttt 3037

                                                                        
Query: 644  atgtagcatttaaatgtagttcgagggaatgtgcgactactaaccatttgaatagttact 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3038 atgtagcatttaaatgtagttcgagggaatgtgcgactactaaccatttgaatagttact 3097

                                                                        
Query: 704  tgtttttgtatcacatgaagtatttatgatctattagtttatacatattatatcgttatg 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3098 tgtttttgtatcacatgaagtatttatgatctattagtttatacatattatatcgttatg 3157

                                                                        
Query: 764  atgaagccatttgatctattttctt-atagcatcttctaaacgtttacttgctgacattg 822
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3158 atgaagccatttgatctattttcttaatagcatcttctaaacgtttacttgctgacattg 3217

                                                                        
Query: 823  atatcgcacgtttggttagtactggctttttcttttcatctgtctctgaaactccccgct 882
            |||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct: 3218 atatcgcacg-ttggttagtact-gctttttcttttcatctgtctctgtaactcctcgct 3275

                                                  
Query: 883  tgacaccaatctgaatgcacttttggagatcatctgga 920
              |||||||||||||||||||||| |||||||||||||
Sbjct: 3276 gaacaccaatctgaatgcactttt-gagatcatctgga 3312


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6868
Number of Sequences: 1807
Number of extensions: 6868
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)