BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB12FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1534 0.0
>3x_Contig1683
Length = 16378
Score = 1534 bits (774), Expect = 0.0
Identities = 854/875 (97%), Gaps = 7/875 (0%)
Strand = Plus / Plus
Query: 86 aaagaatcgaatgataagctgaaggaagaattacgctcgacgaaagagaacctaattgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15121 aaagaatcgaatgataagctgaaggaagaattacgctcgacgaaagagaacctaattgat 15180
Query: 146 acggatgcacagttgcaacagcttaaagatacaatcaagtccttagaaaataaaattttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15181 acggatgcacagttgcaacagcttaaagatacaatcaagtccttagaaaataaaattttc 15240
Query: 206 aatatgagaactgatcagactgaaaaggaatgccaacatggaatgcaggttgaccttctt 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15241 aatatgagaactgaacagactgaaaaggaatgccaacatggaatgcaggttgaccttctt 15300
Query: 266 caaagtaagatcaacgagaccagtacttcactgacttctaaggaaagagaatgttctgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15301 caaagtaagatcaacgagaccagtacttcactgacttctaaggaaagagaatgttctgat 15360
Query: 326 ttaaaggaaaaaattaaatggcttacatctcagcttcaagagtttgatcatcaaagcggt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15361 ttaaaggaaaaaattaaatggcttacatctcagcttcaagagtttgatcatcaaagcggt 15420
Query: 386 agtttattagatcttcaatcaacgcttgattctaaaaatgaagcaatcagaaatcttgaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15421 agtttattagatcttcaatcaacgcttgattctaaaaatgaagcaatcagaaatcttgaa 15480
Query: 446 gcccaactacagagaaatgaacaccagagacaatcattggagagagaagtatctttatta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15481 gcccaactacagagaaatgaacaccagagacaatcattggagagagaagtatctttatta 15540
Query: 506 caagaggaactgtcctcaataagggagacccaccaaaagataatcactcataaagatcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15541 caagaggaactgtcctcaataagggagacccaccaaaagataatcactcataaagatcaa 15600
Query: 566 cagataaaacaattgactgaaaatctatcatcgagtgactctgaagcagttaagagactc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15601 cagataaaacaattgactgaaaatctatcatcgagtgactctgaagcagttaagagactc 15660
Query: 626 aatgaattatcttctgaaagactaaggttgctcgaaactaataaatcacttaagttttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15661 aatgaattatcttctgaaagactaaggttgctcgaaactaataaatcacttaagttttct 15720
Query: 686 gaaaaagatctcaaacaaactgtaaaatctctcgaagatcaactcaattcttgccaagaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15721 gaaaaagatctcaaacaaactgtaaaatctctcgaagatcaactcaattcttgccaagaa 15780
Query: 746 gagttacatgcttcancagataaacataaagaaaaagtcagtgaattgctaagaanacaa 805
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 15781 gagttacatgcttcacaagataaacataaagaaaaagtcagtgaattgctaagaaaacaa 15840
Query: 806 ttaccatatacttcaagtgaagtggaaaagc-atgagac-agaactacttngaatgagaa 863
||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||
Sbjct: 15841 ttaccatatacttcaagtgaagtgg--aagcaatgagacaagaactacttgaaatgagaa 15898
Query: 864 agagttatgacatattgaaaaactgaannacactctttgtcgagaagattagataatttg 923
||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 15899 agagtaatgacatattg-aaaactgaaaacaactctttgtcgagaagattagataatttg 15957
Query: 924 attaggacattctnctttcaaaaaaatcggtcgag 958
| || |||| ||| | |||||||||||||||||||
Sbjct: 15958 a-taagacaatctcc-ttcaaaaaaatcggtcgag 15990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8078
Number of Sequences: 1807
Number of extensions: 8078
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)