BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB12RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig608 1235 0.0
>3x_Contig608
Length = 2255
Score = 1235 bits (623), Expect = 0.0
Identities = 708/730 (96%), Gaps = 5/730 (0%)
Strand = Plus / Plus
Query: 224 gcgctagcatcgacataagagcctgatggaacaccctttggatactcaccttctttcaag 283
||||| ||||||||||||||||||||||||||||||||||||||| | | ||| |||
Sbjct: 25 gcgcttgcatcgacataagagcctgatggaacaccctttggatacaaaaaatatttaaag 84
Query: 284 ttggcagtcaacaaaacagctttaacaatagcccacatggagtgtagagccgtttctttc 343
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 85 ttggcagtcaaaaaaacagatttaacaatagccaacatggagtgtagagccgtttctttc 144
Query: 344 aaaccatatgactcattgacttgctcagctaaaaccttcaaagatggttcaacgtattcc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aaaccatatgactcattgacttgctcagctaaaaccttcaaagatggttcaacgtattcc 204
Query: 404 aagaagtgttctttggaagcaatggctaattctgacaaagcagcagcagcaacttccttt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aagaagtgttctttggaagcaatggctaattctgacaaagcagcagcagcaacttccttt 264
Query: 464 tcgtatgcgataccagtgtttacggtaaatttgctttgtagttcttcttcatccaaatct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcgtatgcgataccagtgtttacggtaaatttgctttgtagttcttcttcatccaaatct 324
Query: 524 tcgatgccttccaagaagtcttcgtcaccgtcaaagttaaattggtattcttcttgttcg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcgatgccttccaagaagtcttcgtcaccgtcaaagttaaattggtattcttcttgttcg 384
Query: 584 agagttttaaatatttcaggaatgatggtttgtaggaaaggagcaaagtccttaccataa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagttttaaatatttcaggaatgatggtttgtaggaaaggagcaaagtccttaccataa 444
Query: 644 acctttgccatattggcaatgaaggcgtaaccagactctctcaatctagcagaatcagtt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctttgccatattggcaatgaaggcgtaaccagactctctcaatctagcagaatcagtt 504
Query: 704 ttgatagcttcgtaggcagcgttcaccaatggctcagcatattcagcanaagcagcggat 763
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ttgatagcttcgtaggcagcgttcaccaatggctcagcatattcagcaaaagcagcggat 564
Query: 764 ttgaccgctctacccatggtggagatgttttcg-aagtcaaggccttcaattc-atgtcg 821
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 565 ttgaccgctctacccatggtggagatgttttcgaaagtcaaggccttcaattcaatgtcg 624
Query: 822 tcttcagacaaacctttcga-ttgggagacgttttgaataaactgttgccagtattgaac 880
|||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tcttcagacaaacc-ttcgatttgggagacgttttgaataaactgttgcaagtattgaac 683
Query: 881 agatgttcttgaagtatggaacaaatcctgatccggcagcaaaagcacaggaaccatatg 940
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct: 684 agatg-tcttgaagtatggaacaaatcctgatccggcagcaaaggcacaagaaccaattg 742
Query: 941 cagaaacaat 950
||||||||||
Sbjct: 743 cagaaacaat 752
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8737
Number of Sequences: 1807
Number of extensions: 8737
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)