BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC01RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1103 763 0.0
3x_Contig440 569 e-162
>3x_Contig1103
Length = 3850
Score = 763 bits (385), Expect = 0.0
Identities = 406/413 (98%)
Strand = Plus / Minus
Query: 48 cttgtttcaaatcaacagatttttcaagtatagctgattctcgaagttggaagaagatat 107
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 417 cttgtttcaaatcaacagattttccaagtatagctgattctcgaagttggaagaagatat 358
Query: 108 ctttcgagctggcgatttcatttcttctatcttctattgtggtttctttgattaggtcat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctttcgagctggcgatttcatttcttctatcttctattgtggtttctttgattaggtcat 298
Query: 168 taatttattcaattatagtaatgtactctcctgagtcacttggtgcatcttggtttaatc 227
||| | | ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct: 297 taagtgaatcaattatagtaatgtactctcctgagtcacttggtgcatcgtggattaaac 238
Query: 228 tgtgaagcttggaccacctaatttcagacatgtatgtttaaagcgcttttatgaacagta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgtgaagcttggaccacctaatttcagacatgtatgtttaaagcgcttttatgaacagta 178
Query: 288 gagcgcaatgtcacgctttgtaccgcaatttctctattttgaatattcttcatctcatct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gagcgcaatgtcacgctttgtaccgcaatttctctattttgaatattcttcatctcatct 118
Query: 348 gatctcatctcatctcaaaactgttcctgaattataaggtttttaacaattttgaatttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gatctcatctcatctcaaaactgttcctgaattataaggtttttaacaattttgaatttt 58
Query: 408 taatatgcatgtaacttatcagattaagaggcaataacgtaagttaaaaacgg 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 taatatgcatgtaacttatcagattaagaggcaataacgtaagttaaaaacgg 5
>3x_Contig440
Length = 1389
Score = 569 bits (287), Expect = e-162
Identities = 323/331 (97%), Gaps = 3/331 (0%)
Strand = Plus / Minus
Query: 553 tatatatattctctttttagtgaagtatcccgatttcatagtaggatttcgtcgtcagaa 612
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 tatatatattctgtttttagtgaagtatcccgatttcatagtaggatttcgtcgtcagaa 1327
Query: 613 tcttcgtcattaacaggaagattaatagttttttcctcgaatccaacccattcacctcca 672
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1326 tcttcgtcattaacaggaagattaatagttttt-cctcgaatccaacccattcacctcca 1268
Query: 673 tctaaatcgtcgtccatgttgatatcctctttgtcttcagattcgttggctgaatcattg 732
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1267 tctaaatcgtcgtccatgttgatatcctctttgtcttcagattcgttgtctgaatcattg 1208
Query: 733 cccagtagattcatatcctcgtcaacagcgttagttgaagaaccatcggtatttgtcaaa 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 cccagtagattcatatcctcgtcaacagcgttagttgaagaaccatcggtatttgtcaaa 1148
Query: 793 aagtctaatgtgtacttatttctcttgtatgtttggacgacgtccatttgtcattctacc 852
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 1147 aagtctaatgtgtacttatttctcttgtatgtttggacgacgt-catttgccattctacc 1089
Query: 853 aataaatcttttggacacttctcaatgcgct 883
|||||||| |||||||| ||||||||||||
Sbjct: 1088 aataaatc-tttggacagctctcaatgcgct 1059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9237
Number of Sequences: 1807
Number of extensions: 9237
Number of successful extensions: 403
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)