BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC04FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1473 0.0
>3x_Contig1488
Length = 9807
Score = 1473 bits (743), Expect = 0.0
Identities = 816/831 (98%), Gaps = 7/831 (0%)
Strand = Plus / Plus
Query: 86 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 5256
Query: 146 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 5316
Query: 206 tgataatctactttttatagcagaagagattcgagaaggctgtctttccattttaatgct 265
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5317 tgataatctacggatga-agcagaagagattcgagaaggctgtctttccattttaatgct 5375
Query: 266 ttctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5376 ttctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaatt 5435
Query: 326 tttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5436 tttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatg 5495
Query: 386 atacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5496 atacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagt 5555
Query: 446 taacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5556 taacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaat 5615
Query: 506 atgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacgga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5616 atgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacgga 5675
Query: 566 tgaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5676 tgaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcag 5735
Query: 626 ttttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5736 ttttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgat 5795
Query: 686 ctgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5796 ctgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaa 5855
Query: 746 tatttcttcgaagggtcttttggcacatcgccaagatccgaaatatcaatttctagcatg 805
|| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5856 ta-ttcttcgaa-ggtcttttggcacatcgccaagatccgaaatatcaa-ttctagcat- 5911
Query: 806 gggtaaaatgtctactggactaacttgaaatcattacccaattgaacatacacatcggaa 865
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 gggtaaaatgtctact-gactaacttgaaatcattacccaattgaacatacacatcggaa 5970
Query: 866 acattacgcttcgttacttttgcccttggaccattgcctcagaatttgtaa 916
||||||||| ||| || ||||||||||||||||||| |||||||||||||
Sbjct: 5971 acattacgc-tcggtaactttgcccttggaccattgcgtcagaatttgtaa 6020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6207
Number of Sequences: 1807
Number of extensions: 6207
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)