BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZC04RM1.SCF screened BAC_end (1077 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1497 323 4e-88 >3x_Contig1497 Length = 11582 Score = 323 bits (163), Expect = 4e-88 Identities = 208/218 (95%), Gaps = 5/218 (2%) Strand = Plus / Minus Query: 39 ctttaaccctttttaaaat-aggatctattcctgattttctacggcggatcgagtaccga 97 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 9115 ctttaaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtaccga 9056 Query: 98 tcacccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaaa 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9055 tcacccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaaa 8996 Query: 158 atttttggaaacttacacgttcttttctatctgagtattaattaatagccgtattactta 217 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || Sbjct: 8995 atttttggaaacttacacgttcttttctatctgagtattaattaatagcgttataac-ta 8937 Query: 218 tccaaggaaaaaaaaaaattatcattttacacaggaaa 255 ||||| |||||||||| ||||| ||||||||||||| Sbjct: 8936 accaag--aaaaaaaaaaatatca-tttacacaggaaa 8902 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,876 Number of Sequences: 1807 Number of extensions: 16876 Number of successful extensions: 122 Number of sequences better than 1.0e-20: 1 length of query: 1077 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1061 effective length of database: 10,329,639 effective search space: 10959746979 effective search space used: 10959746979 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)