BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC05FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig438 1170 0.0
3x_Contig1315 216 6e-56
>3x_Contig438
Length = 1434
Score = 1170 bits (590), Expect = 0.0
Identities = 638/646 (98%), Gaps = 6/646 (0%)
Strand = Plus / Plus
Query: 269 aatttcaaagattctgaattaacgagatcgacattagcaggggagatggccaagatgata 328
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattccaaagattctgaat-aacgagatcgacattagcaggggagatggccaagatgata 59
Query: 329 cagtttggcttggcaacatattccaagatcaaattctcgatttgtctttcaatatccggt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cagtttggcttggcaacatattccaagatcaaattctcgatttgtctttcaatatccggt 119
Query: 389 ggctgttccccaatcggaaccttagtgatacctggtagatccactaaagtcaagttcaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggctgttccccaatcggaaccttagtgatacctggtagatccactaaagtcaagttcaaa 179
Query: 449 acatgcggagaatatattttcaagttgattggaattctgcttattcccttctctttccct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acatgcggagaatatattttcaagttgattggaattctgcttattcccttctctttccct 239
Query: 509 gcaatcctagcagtttcgttttcaatttcccttctaatttcagaaaagtcgtagaatcta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcaatcctagcagtttcgttttcaatttcccttctaatttcagaaaagtcgtagaatcta 299
Query: 569 cgacctggaatatgtaaaaactcaccccattcattctttatttcaggcttatagtttgaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cgacctggaatatgtaaaaactcaccccattcattctttatttcaggcttatagtttgaa 359
Query: 629 ttctttctcaaatgatcttccaaggtcatttccttctccgtgcgggcatctggctcgtca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctttctcaaatgatcttccaaggtcatttccttctccgtgcgggcatctggctcgtca 419
Query: 689 ttaacctgttcaagtgacgtagatgaagaattgtcataattataaaccaatggagaattc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttaacctgttcaagtgacgtagatgaagaattgtcataattataaaccaatggagaattc 479
Query: 749 ggatcaatattattcaactgaagaactagaggacgtctggttacaataccagtaccacga 808
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 ggatcaatattattcaactgaagaactagaggacgtctggtaacaataccagtaccacga 539
Query: 809 ggtaagaaatctctcccgaccaacgtttccaagatcgaagac-taccagaagattgcgat 867
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 540 ggtaagaaatctctcccgaccaacgtttccaagatcgaagacttaccagaagattgcgat 599
Query: 868 cc-ataacagct-aaaccggtagatcc-aactgtcaa-gcctgcat 909
|| ||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 600 ccaataacagctaaaaccggtagatccaaactgtcaatgcctgcat 645
>3x_Contig1315
Length = 8846
Score = 216 bits (109), Expect = 6e-56
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 91 aacacttttgttttgttggatgtcttgctgggatctgttcaccacaccgacaaatcctag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aacacttttgttttgttggatgtcttgctgggatctgttcaccacaccgacaaatcctag 59
Query: 151 cttcaaaggatacaacttccctgacaaaatatccaaagcattagtgcct 199
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 cttcaaaggatacaacttccctgacaaaatatccaaagcattagtgcct 10
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6984
Number of Sequences: 1807
Number of extensions: 6984
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)