BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZC05RM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig532                                                         1495   0.0  

>3x_Contig532 
          Length = 2251

 Score = 1495 bits (754), Expect = 0.0
 Identities = 779/786 (99%), Gaps = 1/786 (0%)
 Strand = Plus / Plus

                                                                       
Query: 136 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 73

                                                                       
Query: 196 aagagctcgagggtttctcgctcat-tatcttagcaaccagctataaaatcgatacagac 254
           ||||||||||||||||||||||||  || |  ||||||||||||||||||||||||||||
Sbjct: 74  aagagctcgagggtttctcgctcagctaacaaagcaaccagctataaaatcgatacagac 133

                                                                       
Query: 255 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 193

                                                                       
Query: 315 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 253

                                                                       
Query: 375 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 313

                                                                       
Query: 435 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 373

                                                                       
Query: 495 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 433

                                                                       
Query: 555 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagtc 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagtc 493

                                                                       
Query: 615 agaactttcacggtaccttccagaggtgaagttaaatacatgctttctactgagccagcc 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agaactttcacggtaccttccagaggtgaagttaaatacatgctttctactgagccagcc 553

                                                                       
Query: 675 cgtgccgttgggttcagagactcatacttgttcttccagtaccatccaaacctatacaaa 734
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cgtgccgttgggttcagagactcatacttgttcttccagtaccatccaaacctatacaaa 613

                                                                       
Query: 735 ttgattatctcgcaatcagagagagacgatctcatcaaaaatggtgtattgccctattcg 794
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttgattatctcgcaatcagagagagacgatctcatcaaaaatggtgtattgccctattcg 673

                                                                       
Query: 795 tacagaaacagaatcattgcgctagttactgcagggagtgtgttccgagaattcggagcc 854
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 674 tacagaaacagaatcattgcgctagttactgcaaggagtgtgttccgagaattcggagcc 733

                                                                       
Query: 855 aaggttgttgtagatggtaaaaacatcacggatgattattacgccggtaagcttcgtgca 914
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaggttgttgtagatggtaaaaacatcacggatgattattacgccggtaagcttcgtgca 793

                 
Query: 915 ttcggg 920
           | ||||
Sbjct: 794 tccggg 799


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6758
Number of Sequences: 1807
Number of extensions: 6758
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)