BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC07FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1376 0.0
>3x_Contig1250
Length = 5563
Score = 1376 bits (694), Expect = 0.0
Identities = 753/766 (98%), Gaps = 5/766 (0%)
Strand = Plus / Minus
Query: 86 cattgaaaaccaaccaagaaaagaatgacgagccgacattggaaaatgttaaggacatag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 cattgaaaaccaaccaagaaaagaatgacgagccgacattggaaaatgttaaggacatag 3768
Query: 146 aagagtttaaccgtgattatattatcgatttagacttgatcggttctttaaaatcgataa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3767 aagagtttaaccgtgattatattatcgatttagacttgatcggttctttaaaatcgataa 3708
Query: 206 aactatccacctcatcttacaatcaagccataagaatcatatataatgtgacaagagata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 aactatccacctcatcttacaatcaagccataagaatcatatataatgtgacaagagata 3648
Query: 266 aaacacagatatcagaatgtgtgaaacagggtgctggattgatgctcttggtatttttag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3647 aaacacagatatcagaatgtgtgaaacagggtgctggattgatgctcttggtatttttag 3588
Query: 326 cacaaaaaaggaacctttctaaagatgaatggtatcttctatcgataagagcactatcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3587 cacaaaaaaggaacctttctaaagatgaatggtatcttctatcgataagagcactatcga 3528
Query: 386 aaacactcatctatgtgaatccagagactgcgttcagcaaatattcaccgttgagcgcag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3527 aaacactcatctatgtgaatccagagactgcgttcagcaaatattcaccgttgagcgcag 3468
Query: 446 caccgttcttatttgaaaatttacctttaccaaatgacaacgctttatcggaacttcaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3467 caccgttcttatttgaaaatttacctttaccaaatgacaacgctttatcggaacttcaat 3408
Query: 506 tcacacaattagatacttacgaagcattattagcgttgacaaatttggctactataaacc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3407 tcacacaattagatacttacgaagcattattagcgttgacaaatttggctactataaacc 3348
Query: 566 agggagtagatctcggcaaaatcatcttgagtaatgctcagtattgggatagtatagaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3347 agggagtagatctcggcaaaatcatcttgagtaatgctcagtattgggatagtatagaga 3288
Query: 626 atctcttattggattcatcggtcagaattcaaagatcgacattagaacttatttccaatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3287 atctcttattggattcatcggtcagaattcaaagatcgacattagaacttatttccaatt 3228
Query: 686 taatgtccaatccaatggctatctctgcatagttcttctgcttttgaaaccctaagagtg 745
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 3227 taatgtccaatccaatggctatctctgcaaagttcttctgctttgaaaaccctaagagtg 3168
Query: 746 cacagaatttcgaaatactggtcaagctttctcgaactttacgatatacaatctttatag 805
||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | | ||
Sbjct: 3167 cacagaatttcgaaatactggtcaagc-ttctcgaacttcacgatatacaatc-tcagag 3110
Query: 806 agccgttgccttccatatttttccaatattgtcaagcaccgttccg 851
|||||||| || ||||| ||| ||||||||| ||||||||||||||
Sbjct: 3109 agccgttg-ctgccata-tttgccaatattg-caagcaccgttccg 3067
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6810
Number of Sequences: 1807
Number of extensions: 6810
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)