BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC10FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1437 0.0
>3x_Contig1604
Length = 15703
Score = 1437 bits (725), Expect = 0.0
Identities = 761/769 (98%), Gaps = 3/769 (0%)
Strand = Plus / Minus
Query: 87 taatttcttttcca-tggtggcgtgccagcttcttctcgctcttgttttggttttagaac 145
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11124 taatttcttttccaatggtggcgtgccagcttcttctcgctcttgttttggttttagaac 11065
Query: 146 cttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacctcttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11064 cttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacctcttg 11005
Query: 206 atgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaataatga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11004 atgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaataatga 10945
Query: 266 atgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcatctgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10944 atgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcatctgt 10885
Query: 326 atcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatttgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10884 atcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatttgaa 10825
Query: 386 ggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttgcaca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10824 ggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttgcaca 10765
Query: 446 ctcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaattatgga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10764 ctcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaattatgga 10705
Query: 506 aaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaattagagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10704 aaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaattagagc 10645
Query: 566 tgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagagagga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10644 tgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagagagga 10585
Query: 626 taatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgtacta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10584 taatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgtacta 10525
Query: 686 tataatcgaaatgtatagtttttatagtttagcagaggaagtttttcatcttaagaaacc 745
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10524 tataatcgaaatgtatagtttttatagtttagcagaggaagttttccatcttaagaaacc 10465
Query: 746 atctgggtttggaacacattttctgtcaataataaaacctaccaagtattctacgcccgt 805
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 10464 atctgggtttggaacacattttctgtcaataataaaacctaccaagtagtctacgccggt 10405
Query: 806 cttactctttgtgggcgggtttcaattgttgggaagaatttgacagctt 854
||||||||| || |||||| |||||||||| ||||||||||||||||||
Sbjct: 10404 cttactcttcgt-ggcggggttcaattgtt-ggaagaatttgacagctt 10358
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7283
Number of Sequences: 1807
Number of extensions: 7283
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)