BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC10RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1681 0.0
>3x_Contig1590
Length = 13653
Score = 1681 bits (848), Expect = 0.0
Identities = 862/867 (99%)
Strand = Plus / Minus
Query: 48 atagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagtatcg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 atagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagtatcg 3741
Query: 108 catagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaactaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 catagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaactaca 3681
Query: 168 tcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccattttgtgtg 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3680 tcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccaaaatgtgtg 3621
Query: 228 gaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagctgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagctgat 3561
Query: 288 atccaattacgttcatatgataatgaaaatctagactttttctccagttttgttctaaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3560 atccaattacgttcatatgataatgaaaatctagactttttctccagttttgttctaaga 3501
Query: 348 gctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagagaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 gctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagagaaaa 3441
Query: 408 cgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaaaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 cgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaaaga 3381
Query: 468 catacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaacttta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 catacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaacttta 3321
Query: 528 ttatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatatcaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 ttatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatatcaa 3261
Query: 588 agagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgatatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 agagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgatatc 3201
Query: 648 tcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattgaac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3200 tcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattgaac 3141
Query: 708 aatccagaattcaaaaaacatttgcaataaaattccagtccgaacgactggcaccggtcc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3140 aatccagaattcaaaaaacatttgcaataaaattccagtccgaacgactggcaccggtcc 3081
Query: 768 agcaaaacaacatgcacatatctataatttcgaaggcctgtttatatacaacaataaata 827
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3080 agcaaaacaacatgcacatatctataatttcgaaggcctgtatatatacaacaataaata 3021
Query: 828 attcaacgagacgtacccaaatctctatcacatatattatgtatcgatttatccgtacat 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3020 attcaacgagacgtacccaaatctctatcacatatattatgtatcgatttatccgtacat 2961
Query: 888 attgaaatcctnctcaagttcacattg 914
||||||||||| |||||||||||||||
Sbjct: 2960 attgaaatcctcctcaagttcacattg 2934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6493
Number of Sequences: 1807
Number of extensions: 6493
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)