BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZC11RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1479 0.0
>3x_Contig1782
Length = 24703
Score = 1479 bits (746), Expect = 0.0
Identities = 831/854 (97%), Gaps = 4/854 (0%)
Strand = Plus / Plus
Query: 51 gctttatccttacttggttgtttttaatgagtttttggggctcttaacatggactagcga 110
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4213 gctttatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcga 4272
Query: 111 cgatatttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttcca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 cgatatttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttcca 4332
Query: 171 agtggtggtaaggtactttggccatttcttgtttgtcggattgttatggtgattttctgc 230
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 4333 agtggtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgc 4392
Query: 231 tttggatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 tttggatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgca 4452
Query: 291 tatcatttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 tatcatttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggac 4512
Query: 351 gggaaacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 gggaaacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaat 4572
Query: 411 tgtgtcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 tgtgtcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgct 4632
Query: 471 cacgtaccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4633 cacgtaccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgt 4692
Query: 531 ccggttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaagg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 ccggttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaagg 4752
Query: 591 tggaatcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaac 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4753 tggaatcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaac 4812
Query: 651 cgatgcagatgatgggaaacccattagattcacttatgtattatatgagaaccagagacg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 cgatgcagatgatgggaaacccattagattcacttatgtattatatgagaaccagagacg 4872
Query: 711 ttggctcggtattggctggactgccaacatgttgacttacgagagaagttcatggacaga 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 ttggctcggtattggctggactgccaacatgttgacttacgagagaagttcatggacaga 4932
Query: 771 tgagtttttatacgatgcaccatcttcagaatcattttaaacttccataagtagctaacg 830
|||||||||| |||| ||||||||| ||||| || |||||||||||| ||| |||| ||
Sbjct: 4933 tgagtttttaaacgaggcaccatctccagaa-caatttaaacttccagaagaggctagcg 4991
Query: 831 gtatggcatgtaaatgggtgggattatacatggagacttttacatgaccaatgtatggat 890
|||||||||| | |||||| |||| | |||||||||| || |||||||||||| |||||
Sbjct: 4992 gtatggcatggagatgggt-ggataagacatggagac-ttgacatgaccaatg-atggag 5048
Query: 891 ccatccaattctct 904
|||||||| |||||
Sbjct: 5049 ccatccaactctct 5062
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5922
Number of Sequences: 1807
Number of extensions: 5922
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)