BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1219 1610 0.0
>3x_Contig1219
Length = 5018
Score = 1610 bits (812), Expect = 0.0
Identities = 836/840 (99%), Gaps = 3/840 (0%)
Strand = Plus / Minus
Query: 88 taaagatttcacagaagtactatgaaatggcagctttgaccaatggacattctgtatcca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 taaagatttcacagaagtactatgaaatggcagctttgaccaatggacattctgtatcca 4910
Query: 148 tgtacaagctcgggatgttctatttgaaaggactgagaacgaaatctggtgaaatcgtta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 tgtacaagctcgggatgttctatttgaaaggactgagaacgaaatctggtgaaatcgtta 4850
Query: 208 tcaaaagagaccctgtacaagctttatactggtttagaatggctaccaaggagatcgaaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 tcaaaagagaccctgtacaagctttatactggtttagaatggctaccaaggagatcgaaa 4790
Query: 268 tcccacgagacgataaggctcatgtagaactggaatcagtatcgccacaagcgatggttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 tcccacgagacgataaggctcatgtagaactggaatcagtatcgccacaagcgatggttg 4730
Query: 328 agttgggtaagatttacggatttgaagagttagacgaatccgttagacaagagcttctga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4729 agttgggtaagatttacggatttgaagagttagacgaatccgttagacaagagcttctga 4670
Query: 388 gaaacggaatcactcaagataaggaaaaatcgatcaaatactattatagatgcgcccatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 gaaacggaatcactcaagataaggaaaaatcgatcaaatactattatagatgcgcccatg 4610
Query: 448 acttcgattattctcaagcccaatacaaattgggtcatttttatgaatttggggagatgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 acttcgattattctcaagcccaatacaaattgggtcatttttatgaatttggggagatgg 4550
Query: 508 gactacctgtaatacccaagaagtccattgcatggtacgcaaagagttccatgaacaaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 gactacctgtaatacccaagaagtccattgcatggtacgcaaagagttccatgaacaaga 4490
Query: 568 ccaaaccaaacccgttagccatggtagcacttagtggctggtaccttaccggtgctgagg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 ccaaaccaaacccgttagccatggtagcacttagtggctggtaccttaccggtgctgagg 4430
Query: 628 ggatattgaaaccgaacgacgtagaggccttcaagtgggtgtcacgtgcttcgaaattat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 ggatattgaaaccgaacgacgtagaggccttcaagtgggtgtcacgtgcttcgaaattat 4370
Query: 688 ctgacgggaaattaccaagagcagagtatgcattagcattttacttggagaaaggccttg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 ctgacgggaaattaccaagagcagagtatgcattagcattttacttggagaaaggccttg 4310
Query: 748 gatgtcagccaaacatacaagaagccaaggtacaccacgaaactgctgctcgtcttggcc 807
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4309 gatgtcagccaaacatacaagaggccaaggtacaccacgaaactgctgctcgtcttggcc 4250
Query: 808 atccgaaagccatcgagggccttga-gaaaatgtgacctttgcggttttatttttactgt 866
|||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 4249 atccgaaagccatcga-ggccttgaggaaaatgtgacc-ttgcggttttatttttactgt 4192
Query: 867 cctgcgtagctagcttcattgtaatgatatgtaataataagatttggttagagtagttag 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191 cctgcgtagctagcttcattgtaatgatatgtaataataagatttggttagagtagttag 4132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5470
Number of Sequences: 1807
Number of extensions: 5470
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)