BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD02RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1678 1663 0.0
>3x_Contig1678
Length = 12472
Score = 1663 bits (839), Expect = 0.0
Identities = 859/863 (99%), Gaps = 2/863 (0%)
Strand = Plus / Minus
Query: 44 gcttaatgacggagaatttagagttgttacattggagaagaatcgcggtaaaggaggagc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 gcttaatgacggagaatttagagttgttacattggagaagaatcgcggtaaaggaggagc 2431
Query: 104 agtaagacacgggatgttgcactccagaggcgaatatctattgtttgctgatgctgacgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 agtaagacacgggatgttgcactccagaggcgaatatctattgtttgctgatgctgacgg 2371
Query: 164 tgcctcgaagttctctgatgttgccaagcttttggcaaacacaaaggttgattcttcccg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 2370 tgcctcgaagttctctgatgttgccaagcttttggcaaacacaaaggttgatgca-cccg 2312
Query: 224 aggtatcgattggatcacgtgctcatatggttaacaccgatgcagttgtcaagcgaacaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 aggtatcgattggatcacgtgctcatatggttaacaccgatgcagttgtcaagcgaacaa 2252
Query: 284 ttatcagaaacttcttaatgtactctttacatgcattggtgttcatcttcggtattagat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 ttatcagaaacttcttaatgtactctttacatgcattggtgttcatcttcggtattagat 2192
Query: 344 ctatcaaggacacacaatgtggttttaaattatttaataggaaggctgctaaggaaattt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 ctatcaaggacacacaatgtggttttaaattatttaataggaaggctgctaaggaaattt 2132
Query: 404 tccctaagttacacactgaaggatggattttcgacgttgaaatcttgatcgttgcgttgc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 tccctaagttacacactgaaggatggattttcgacgttgaaatcttgatcgttgcgttgc 2072
Query: 464 gtaaaaatattccaatcaatgagctaccgatctcatggcatgaagttgacggttccaaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 gtaaaaatattccaatcaatgagctaccgatctcatggcatgaagttgacggttccaaaa 2012
Query: 524 tggatttggctcgtgacagtattaacatggccaaggatttagtcatcataaggttagcat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 tggatttggctcgtgacagtattaacatggccaaggatttagtcatcataaggttagcat 1952
Query: 584 atatactaggcatatatagcgataaataagcttcatagaatttgcgcgaagataaagcgc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 atatactaggcatatatagcgataaataagcttcatagaatttgcgcgaagataaagcgc 1892
Query: 644 aagtaaggatatattctatcagattactttcatgaaacattgagtacaacccaagctttt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 aagtaaggatatattctatcagattactttcatgaaacattgagtacaacccaagctttt 1832
Query: 704 atactggtatgagatagatagaactatagaatatctgaaagtaacatagtaggtgattat 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 atactggtatgagatagatagaactatagaatatctgaaagtaacatagtaggtgattat 1772
Query: 764 gggattcaaagcttattcgaacctttgtaaatgtcataggataaagatgaaagcttcctt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 gggattcaaagcttattcgaacctttgtaaatgtcataggataaagatgaaagcttcctt 1712
Query: 824 cttacaatggtaccgttattcaaaaa-gttctcacgatagctgcatattctttactatca 882
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1711 cttacaatggtaccgttattcaaaaaggttctcacgatagctgcatattctttactatca 1652
Query: 883 tgttgaatgttatcaaaagcatt 905
|||||||||||||||||||||||
Sbjct: 1651 tgttgaatgttatcaaaagcatt 1629
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6327
Number of Sequences: 1807
Number of extensions: 6327
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)