BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD04RM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1647 0.0
>3x_Contig1620
Length = 12263
Score = 1647 bits (831), Expect = 0.0
Identities = 831/831 (100%)
Strand = Plus / Plus
Query: 48 ctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcgtcta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1950 ctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcgtcta 2009
Query: 108 attcgctctctgccattttttcattattaacaatccaaaggccttccacagaagcagaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010 attcgctctctgccattttttcattattaacaatccaaaggccttccacagaagcagaag 2069
Query: 168 tccctcgttctccaggtttattgctgtacggatcttccacccattgttgattacaattac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2070 tccctcgttctccaggtttattgctgtacggatcttccacccattgttgattacaattac 2129
Query: 228 tccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgatatagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2130 tccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgatatagt 2189
Query: 288 cgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaaccacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2190 cgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaaccacc 2249
Query: 348 aattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctttcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2250 aattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctttcaa 2309
Query: 408 ccgaactttctattccttcccattctttgtccctcgtgatgtgctcttggttgttctgct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 ccgaactttctattccttcccattctttgtccctcgtgatgtgctcttggttgttctgct 2369
Query: 468 ttccgacacaatttgaacaaatccaaaccacaccttttgccggcttcttttctaagggcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 ttccgacacaatttgaacaaatccaaaccacaccttttgccggcttcttttctaagggcg 2429
Query: 528 ggtccatgcaccacagatgaatcgatatcttacagtcatcacacttgatagaagacgatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 ggtccatgcaccacagatgaatcgatatcttacagtcatcacacttgatagaagacgatt 2489
Query: 588 ggtggcaccaatcgcgacattcgccgcaacgcaaatcccagctttggtcttcggttcttt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 ggtggcaccaatcgcgacattcgccgcaacgcaaatcccagctttggtcttcggttcttt 2549
Query: 648 tgccacagacatatttggtaagtaggttatccagtgggaatttatcctcatagaaaatga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 tgccacagacatatttggtaagtaggttatccagtgggaatttatcctcatagaaaatga 2609
Query: 708 atgggaatttactagttaaaatcttgaaatacggtagatcagaagcaactcgcacagcca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 atgggaatttactagttaaaatcttgaaatacggtagatcagaagcaactcgcacagcca 2669
Query: 768 tctgatctgttttttccatttggtaatactttagtgtatatctatcgaaaagttggttga 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 tctgatctgttttttccatttggtaatactttagtgtatatctatcgaaaagttggttga 2729
Query: 828 agtagaaacaattgggtcttgagacgtattctgttagctgatcaattgagg 878
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 agtagaaacaattgggtcttgagacgtattctgttagctgatcaattgagg 2780
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6340
Number of Sequences: 1807
Number of extensions: 6340
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)