BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZD06FM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1667                                                        1435   0.0  

>3x_Contig1667 
          Length = 12071

 Score = 1435 bits (724), Expect = 0.0
 Identities = 831/855 (97%), Gaps = 9/855 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   ctgctatatgtatccctgccatggcactaggagattcgattagtatatctataccttgac 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6622 ctgctatatgtatccctgccatggcactaggagattcgattagtatatctataccttgac 6563

                                                                        
Query: 146  atccctcccaagctgtatccaacagagatgagatccaagtagaaaagtttgtagaagcgt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6562 atccctcccaagctgtatccaacagagatgagatccaagtagaaaagtttgtagaagcgt 6503

                                                                        
Query: 206  ccctcaataaacttttgttcattgatccatgctgtaccatcaaagatattagttctgcag 265
            ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6502 ccctcaataaacccatgttcattgatccatgctgtaccatcaaagatattagttctgcag 6443

                                                                        
Query: 266  gattaccagatatttctctaaatcctatattatgagaaactatccaatccttaaattctc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6442 gattaccagatatttctctaaatcctatattatgagaaactatccaatccttaaattctc 6383

                                                                        
Query: 326  catgagttagtataataacttcatgaccttcggcttgcaaaccctttgccaatgcaatat 385
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6382 catgagttagtataataacttcatgac-ttcggcttgcaaaccctttgccaatgcaatat 6324

                                                                        
Query: 386  atggttgtacatcacctcttgaaccgattgtaagtaatccgaatttgtagcttttactag 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323 atggttgtacatcacctcttgaaccgattgtaagtaatccgaatttgtagcttttactag 6264

                                                                        
Query: 446  gtttgattacagtggtgaaatacgggtttttttcaacgattaatggaatatcaaagcctt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6263 gtttgattacagtggtgaaatacgggtttttttcaacgattaatggaatatcaaagcctt 6204

                                                                        
Query: 506  gttcactaattttttcttctaataatttgagactcgcagcttctgagaggcggtgaacaa 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6203 gttcactaattttttcttctaataatttgagactcgcagcttctgagaggcggtgaacaa 6144

                                                                        
Query: 566  cttcagctgtagactttcgttttagcgttgaccgatgactacttacagcatccatgactt 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6143 cttcagctgtagactttcgttttagcgttgaccgatgactacttacagcatccatgactt 6084

                                                                        
Query: 626  taatcatcacaaactcacaatcatctcgagcattcttgttaccaaattctaagaatagtt 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6083 taatcatcacaaactcacaatcatctcgagcattcttgttaccaaattctaagaatagtt 6024

                                                                        
Query: 686  cttcatgaccgtgaataacaattactaaaccaaaataaccaaatctaaaacgcgttttcc 745
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6023 cttcatgaccgtgaataacaattactaaaccaaaataaccaaatctaaaacgcg-tttcc 5965

                                                                        
Query: 746  ttgtagcagtttctcaacatccctccaacgttagcaccgttttagtgctaactncaggc- 804
            ||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||| 
Sbjct: 5964 ttgtagcag-ttctcaacat-cctccaacggtagcaccgttttagtgctaactccaggca 5907

                                                                        
Query: 805  aaagagatcggaaacatatattcttgtccgatatat-aatctttccgtattgggaaacgt 863
            |||||||||||||||||||||||||||||||||||| |||||| ||||||  || |||||
Sbjct: 5906 aaagagatcggaaacatatattcttgtccgatatataaatcttcccgtatatgggaacgt 5847

                                                                        
Query: 864  tcttattgagttatccattggaactggctactagggttcgcttgtttc-tcaaaaaagaa 922
            || ||||||| ||||||| | |||||||||||| ||||||| |||||| |||||  ||||
Sbjct: 5846 tcctattgaggtatccatggtaactggctacta-ggttcgc-tgtttcgtcaaaggagaa 5789

                           
Query: 923  atgctgcctgaaacg 937
            |||||||||||||||
Sbjct: 5788 atgctgcctgaaacg 5774


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)