BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD06RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1614 0.0
>3x_Contig1345
Length = 7291
Score = 1614 bits (814), Expect = 0.0
Identities = 883/900 (98%), Gaps = 5/900 (0%)
Strand = Plus / Minus
Query: 44 gcttttttgactgtttttcagcttctttttgaagtttttcctcattgattttcatgattt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 gcttttttgactgtttttcagcttctttttgaagtttttcctcattgattttcatgattt 2213
Query: 104 catctttctctttatcagtcaaaaatttgacaagagatgcttgaccttgtctgtcatcta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 catctttctctttatcagtcaaaaatttgacaagagatgcttgaccttgtctgtcatcta 2153
Query: 164 ctgcaacatttagtgcgactaattcttcatctctaagtctatccgtagcttgtaataact 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2152 ctgcaacatttagtgcgactaattcttcatctctaagtctatccgtagcttgtaaaaact 2093
Query: 224 gcgatgaaggtgctttattcattgccaattgacgaacttcatctctgaaataagagaggc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gcgatgaaggtgctttattcattgccaattgacgaacttcatctctgaaataagagaggc 2033
Query: 284 atctgacataaggtagagcgatgtcttcctttgaaacgtcgggggaagaatcagaagatg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 atctgacataaggtagagcgatgtcttcctttgaaacgtcgggggaagaatcagaagatg 1973
Query: 344 aatcgtccaaccaacctaagccatcagaacgtaattgaaatccgatgacaccgagaatct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1972 aatcgtccaaccaacctaagccatcagaacgtaattgaaatccgatgacaccgagaatct 1913
Query: 404 tacttatatatctggtaattgccaatagcggttcaatttttagttcagagctaatgttcg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 tacttatatatctggtaattgccaatagcggttcaatttttagttcagagctaatgttcg 1853
Query: 464 caatgtaactgttagatttagtcaaaagttcattaagatgtttcaatacctgtggtgtag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1852 caatgtaactgttagatttagtcaaaagttcattaagatgtttcaatacctgtggtgtag 1793
Query: 524 ataggttatcacaaaaggaagcatgaactttttcctgagttgatttcaaaacgttgagta 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 ataggttatcacaaaaggaagcatgaactttttcctgagttgatttcaaaacgttgagta 1733
Query: 584 aagccttctcttcatttgacaattttttgctaacaatctttcctaaacccaaggaatgct 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1732 aagccttctcttcatttgacaattttttgctaacaatctttcctaaacccaaggaatgct 1673
Query: 644 tgtagtcattattcaaagcccttatatttttgaagaaattagtaaatgaagattcaagag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 tgtagtcattattcaaagcccttatatttttgaagaaattagtaaatgaagattcaagag 1613
Query: 704 atttcacttcgtttaataacgaatccttgaaatctaatngattgttccattgcacagaag 763
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1612 atttcacttcgtttaataacgaatccttgaaatctaattgattgttccattgcacagaag 1553
Query: 764 caaatgcaagtcttaactgacgagcgctgtatttgtttagagcttcttc-atggtaatan 822
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1552 caaatgcaagtcttaactgacgagcgctgtatttgtttagagcttcttcaatggtaataa 1493
Query: 823 aaatcttc-atgattttgac-ttttttgcccctcaatatgtaaatgacctgtttgaagga 880
|| ||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct: 1492 aattcttcaatgattttgacattttttgcccttcaatatgtaaatgacctgtatgaagga 1433
Query: 881 agt-attaattcactggatggttatcataccaggcttccgtttgtggccattcattatcg 939
||| |||||| |||| ||||||||||||| |||||||| | ||||| | |||||||||||
Sbjct: 1432 agtaattaatccact-gatggttatcatagcaggcttcggattgtgccaattcattatcg 1374
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8063
Number of Sequences: 1807
Number of extensions: 8063
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)