BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD07FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1392 0.0
>3x_Contig1017
Length = 3431
Score = 1392 bits (702), Expect = 0.0
Identities = 770/789 (97%), Gaps = 4/789 (0%)
Strand = Plus / Plus
Query: 86 cgacggcagctgttagtggttttgtcaaataatcgacatctacaatagccgaatcgttgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cgacggcagctgttagtggttttgtcaaataatcgacatctacaatagccgaatcgttgt 436
Query: 146 ggcactccacggtaatatggatttcgaaatctttaccgtgatactgggttacatcattat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggcactccacggtaatatggatttcgaaatctttaccgtgatactgggttacatcattat 496
Query: 206 acttccatacaatgtgttcaaacgattcttcctttgccttgtctttaaacttcaaatcag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acttccatacaatgtgttcaaacgattcttcctttgccttgtctttaaacttcaaatcag 556
Query: 266 gcagcttgattctctctttgatgtcctttagcaaatgtttttcgatatgctgatgcaaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcagcttgattctctctttgatgtcctttagcaaatgtttttcgatatgctgatgcaaat 616
Query: 326 gcctcacaaacttctttgaatgtgaattggctgaatccttaatcttttcaggatcctcat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcctcacaaacttctttgaatgtgaattggctgaatccttaatcttttcaggatcctcat 676
Query: 386 gcgattcgtgtagtacaaatggaggatagtacttcaaatgacaatgaacgtgatcaaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcgattcgtgtagtacaaatggaggatagtacttcaaatgacaatgaacgtgatcaaatt 736
Query: 446 cctcatcttcagtttcgttcttaatgaatgtttcgaaatcgttcaaatcttcaaacacct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctcatcttcagtttcgttcttaatgaatgtttcgaaatcgttcaaatcttcaaacacct 796
Query: 506 tgacgacttctccggacttggtggtgacattagcaaactttggtcctttatccttcttgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgacgacttctccggacttggtggtgacattagcaaactttggtcctttatccttcttgg 856
Query: 566 tcatttctgtgaatattcttctctgatgtagagtgtgtctgtgtgttaaaagttaatata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tcatttctgtgaatattcttctctgatgtagagtgtgtctgtgtgttaaaagttaatata 916
Query: 626 tgtattaactattgcaaattgatgcttgtgtaccgatggtagcacttcag-aaaaggaaa 684
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 917 tgtattaactattgcaaattgatgcttgtgtaccgatggtagcactcaagaaaaaggaaa 976
Query: 685 aacacataaacttagggtatacggncaagaggattagcanacttggagttaggattttta 744
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 977 aacacataaacttagggtatacggcaaagaggattagcaaacttggagttagga-tttta 1035
Query: 745 ccctctatttatatgccacttttacctttgntgncttatgtngttttacttccacacccc 804
|||||||||||||||||||||||||||||| || ||||||| ||||||| | |||||||
Sbjct: 1036 ccctctatttatatgccacttttacctttgttgtcttatgtgtttttactccaacacccc 1095
Query: 805 taaccctaatt-cacatagatccaacccttaattcgcagaggtac-aattaacacaacca 862
||||||||||| ||||||||||||||||| | | ||||||||||| ||| ||||||||||
Sbjct: 1096 taaccctaattccacatagatccaaccctaattccgcagaggtacaaataaacacaacca 1155
Query: 863 gctagagat 871
|||||||||
Sbjct: 1156 gctagagat 1164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6214
Number of Sequences: 1807
Number of extensions: 6214
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)