BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD07RM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1103 777 0.0
3x_Contig440 605 e-173
>3x_Contig1103
Length = 3850
Score = 777 bits (392), Expect = 0.0
Identities = 399/400 (99%), Gaps = 1/400 (0%)
Strand = Plus / Minus
Query: 53 aacagattttcca-gtatagctgattctcgaagttggaagaagatatctttcgagctggc 111
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacagattttccaagtatagctgattctcgaagttggaagaagatatctttcgagctggc 345
Query: 112 gatttcatttcttctatcttctattgtggtttctttgattaggtcattaagtgaatcaat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gatttcatttcttctatcttctattgtggtttctttgattaggtcattaagtgaatcaat 285
Query: 172 tatagtaatgtactctcctgagtcacttggtgcatcgtggattaaactgtgaagcttgga 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tatagtaatgtactctcctgagtcacttggtgcatcgtggattaaactgtgaagcttgga 225
Query: 232 ccacctaatttcagacatgtatgtttaaagcgcttttatgaacagtagagcgcaatgtca 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ccacctaatttcagacatgtatgtttaaagcgcttttatgaacagtagagcgcaatgtca 165
Query: 292 cgctttgtaccgcaatttctctattttgaatattcttcatctcatctgatctcatctcat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cgctttgtaccgcaatttctctattttgaatattcttcatctcatctgatctcatctcat 105
Query: 352 ctcaaaactgttcctgaattataaggtttttaacaattttgaatttttaatatgcatgta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctcaaaactgttcctgaattataaggtttttaacaattttgaatttttaatatgcatgta 45
Query: 412 acttatcagattaagaggcaataacgtaagttaaaaacgg 451
||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 acttatcagattaagaggcaataacgtaagttaaaaacgg 5
>3x_Contig440
Length = 1389
Score = 605 bits (305), Expect = e-173
Identities = 324/328 (98%), Gaps = 2/328 (0%)
Strand = Plus / Minus
Query: 544 tatatatattctctttttagtgaagtatcccgatttcatagtaggatttcgtcgtcagaa 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 tatatatattctgtttttagtgaagtatcccgatttcatagtaggatttcgtcgtcagaa 1327
Query: 604 tcttcgtcattaacaggaagattaatagttttttcctcgaatccaacccattcacctcca 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1326 tcttcgtcattaacaggaagattaatagttttt-cctcgaatccaacccattcacctcca 1268
Query: 664 tctaaatcgtcgtccatgttgatatcctctttgtcttcagattcgttgtctgaatcattg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 tctaaatcgtcgtccatgttgatatcctctttgtcttcagattcgttgtctgaatcattg 1208
Query: 724 cccagtagattcatatcctcgtcaacagcgttagttgaagaaccatcggtatttgtcaaa 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 cccagtagattcatatcctcgtcaacagcgttagttgaagaaccatcggtatttgtcaaa 1148
Query: 784 aagtctaatgtgtacttatttnctcttgnatgtttggacgacgtcatttgccattctacc 843
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1147 aagtctaatgtgtacttattt-ctcttgtatgtttggacgacgtcatttgccattctacc 1089
Query: 844 aataaatctttggacagctctcaatgcg 871
||||||||||||||||||||||||||||
Sbjct: 1088 aataaatctttggacagctctcaatgcg 1061
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8454
Number of Sequences: 1807
Number of extensions: 8454
Number of successful extensions: 391
Number of sequences better than 1.0e-20: 2
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)