BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD09RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1503 0.0
>3x_Contig1772
Length = 25851
Score = 1503 bits (758), Expect = 0.0
Identities = 856/881 (97%), Gaps = 6/881 (0%)
Strand = Plus / Plus
Query: 43 gcttgcaacgtttttcgtcattatttgcctatcctacttgatgttcccagcagatttaga 102
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18650 gcttgcaacgtttttcgtcattatgcgcctatcctacttgatgttcccagcagatttaga 18709
Query: 103 acattgctctaccgaagaagaaaaatatgttgttagtcatgagattggaactgtttatat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18710 acattgctctaccgaagaagaaaaatatgttgttagtcatgagattggaactgtttatat 18769
Query: 163 tgatgtttccaatttatgcatgcgtatgtttaacctttggagaagaggtgttnttc-agt 221
|||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 18770 tgatgtcgccaatttatgcatgcgtatgtttaacctttggagaagaggtgtgttgccagt 18829
Query: 222 ccttcattgtttgctattgttgagagtgtatcgcagatatgcacctgaagagggagatat 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18830 ccttcattgtttgctattgttgagagtgtatcgcagatatgcacctgaagagggagatat 18889
Query: 282 tgcggatggtgctgactctagcacatttacaggttcattagttcagattgctcaatctct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18890 tgcggatggtgctgactctagcacatttacaggttcattagttcagattgctcaatctct 18949
Query: 342 tggaataaatacagatgctgaagcatcgtaccagctaaccaattttgagatttatttaca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18950 tggaataaatacagatgctgaagcatcgtaccagctaaccaattttgagatttatttaca 19009
Query: 402 ttcttggagaaaggcctggtacactatatatttcatggatgtttctgaggcaatgaatat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19010 ttcttggagaaaggcctggtacactatatatttcatggatgtttctgaggcaatgaatat 19069
Query: 462 ggggaattgcttcactattgacgtagaccaattcaacaccaaacttcctcatatcaaacg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19070 ggggaattgcttcactattgacgtagaccaattcaacaccaaacttcctcatatcaaacg 19129
Query: 522 agaagaagatgggagcatcccggaatttttcctaaatcctacccatgaggtggccagtgt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19130 agaagaagatgggagcatcccggaatttttcctaaatcctacccatgaggtggccagtgt 19189
Query: 582 tgactgctataggaaaaactttgaattttctttacatgtgaggaaacttttaaaggttgt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19190 tgactgctataggaaaaactttgaattttctttacatgtgaggaaacttttaaaggttgt 19249
Query: 642 catgaacaaaagaaacagatccccttgcaataccataatggatagaattgcataagtgga 701
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 19250 catgaacaaaagaaacagatccccttgcaataccataatggatagaattgcaaaagtgga 19309
Query: 702 gaataacttgaagataaactattccgaggatttgtcatatatgattttcttcgggcgtgg 761
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 19310 gaataacttgaagataaactattccgaggatttgtcatatatga-tttcttcgggcgtgg 19368
Query: 762 gaagttcacagctatgcattgaaaaatgcaataactttcgcatgtttgtgaattcacaat 821
| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 19369 aaggttcacagctatgcattgaaaaatgcaataactttcgcatgtatgtgaatacacaat 19428
Query: 822 cgatgttgctt-ttataaagctacgactgtt-atttctctggaaagtcatcatgctgaac 879
||||||||||| | ||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct: 19429 cgatgttgcttataataaagctacgactgttcattcatctggatagtcatcatgctgaac 19488
Query: 880 ttaagg-gaataatttccacaaaccttttc-attgctcaaa 918
| |||| ||||||||||||| ||||||| | ||||||||||
Sbjct: 19489 taaaggtgaataatttccacgaacctttccaattgctcaaa 19529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7830
Number of Sequences: 1807
Number of extensions: 7830
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)