BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD10RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig400 1394 0.0
>3x_Contig400
Length = 2423
Score = 1394 bits (703), Expect = 0.0
Identities = 715/719 (99%)
Strand = Plus / Plus
Query: 49 ttatctcatcagtcatcgttattgagctacattatcgctttgcatatagtattatgtctc 108
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 ttatctcatcagtcatcggaattgagctacattatcgctttgcatatagtattatgtctc 1577
Query: 109 attgagaattcaatagtgaacaaacaaagttttgcaaaacatccagccatgaaatcgttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 attgagaattcaatagtgaacaaacaaagttttgcaaaacatccagccatgaaatcgttt 1637
Query: 169 gtgaaagcccgcttacgtggaaatgaaatggatcctttgttgaacgcaattttcggagag 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1638 gtgaaagcccgcttacgtggaaatgaaatggatcctttgttgaacgcaactttcggagag 1697
Query: 229 ttgtattgccacgtctttgccattcaagctaacgctgaagatatacgatttgtatacgaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 ttgtattgccacgtctttgccattcaagctaacgctgaagatatacgatttgtatacgaa 1757
Query: 289 aacacctacccttatgattggaatattgtcgaaaacattgcaagccagataaccgatcag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 aacacctacccttatgattggaatattgtcgaaaacattgcaagccagataaccgatcag 1817
Query: 349 tctatgcaaacacatttgctatttgaaaattgttacctaacattcgcaaatctcaaaatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 tctatgcaaacacatttgctatttgaaaattgttacctaacattcgcaaatctcaaaatt 1877
Query: 409 cctaacagcttcacacttcaagtcactctagaattattgaacactacttcgaatagagtc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 cctaacagcttcacacttcaagtcactctagaattattgaacactacttcgaatagagtc 1937
Query: 469 atcaccttagggaagaacacttacctagaaatcagggacacccatatatgtatatcgaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 atcaccttagggaagaacacttacctagaaatcagggacacccatatatgtatatcgaat 1997
Query: 529 gatgaatttattacggcattatttgatggtttcgaatttgaaataggcgtgatttactca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 gatgaatttattacggcattatttgatggtttcgaatttgaaataggcgtgatttactca 2057
Query: 589 atgattttatgctttgatgctggctcagtgacgttgtttgttgatcacgtatttatccag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 atgattttatgctttgatgctggctcagtgacgttgtttgttgatcacgtatttatccag 2117
Query: 649 accatcccacttgtctcagatagcattgaagacctctctactgtggaacttggatctatg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 accatcccacttgtctcagatagcattgaagacctctctactgtggaacttggatctatg 2177
Query: 709 ctttcattttttgcagtgttcaaatttactatactcgattattgtataacgccaaatca 767
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2178 ctttcattttttgcagtgttcaaatttactatactcgattattttataacgccaaatca 2236
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6325
Number of Sequences: 1807
Number of extensions: 6325
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)