BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1354 0.0
>3x_Contig1210
Length = 6392
Score = 1354 bits (683), Expect = 0.0
Identities = 747/766 (97%), Gaps = 2/766 (0%)
Strand = Plus / Minus
Query: 53 agcttgaggtgaataaattgtgattcaaagaaaaaaaagtaagaagagaaaaagttgtaa 112
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5467 agcttgaggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaa 5408
Query: 113 aacccttcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407 aacccttcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtt 5348
Query: 173 tcggttaacatctttaattaaaatgggaggttggtcataacaaatatcattatancttgg 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5347 tcggttaacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttgg 5288
Query: 233 tagattttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5287 tagattttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgt 5228
Query: 293 ctgggcatgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5227 ctgggcatgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcac 5168
Query: 353 caccttgttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcgg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5167 caccttgttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcgg 5108
Query: 413 tttgtaattcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5107 tttgtaattcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaa 5048
Query: 473 ctctagcgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagcct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047 ctctagcgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagcct 4988
Query: 533 tgtccaatttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcac 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4987 tgtccaatttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcac 4928
Query: 593 ccttgttggcggtttcaatagccttctttctggcttcatcttgttctctgaactattcag 652
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 4927 ccttgttggcggtttcaatagccttctttctggtttcatcttgttctctgaacttttcag 4868
Query: 653 catcgctaaccatttgctcgatttcagattcagactaaccggaagaaccagcttcagtga 712
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 4867 catcgctaaccatttgctcgatttcagattcggacaaaccggaagaaccagcaacagtga 4808
Query: 713 tggaagcattcttgttggaagccttgtcttctatcatagacgttgatgataccatcggca 772
||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 4807 tggaagcatccttgttggaagccttgtc-tctagcagagacgttgatgataccatcggca 4749
Query: 773 tcaatgtcgaatgacactttcgatttgtgggacactctttgtagct 818
||||| ||||| || || ||||||||||||||||| ||||| ||||
Sbjct: 4748 tcaatatcgaaagaaac-ttcgatttgtgggacaccctttggagct 4704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8186
Number of Sequences: 1807
Number of extensions: 8186
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)