BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD12FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1336 0.0
>3x_Contig1645
Length = 12736
Score = 1336 bits (674), Expect = 0.0
Identities = 811/846 (95%), Gaps = 8/846 (0%)
Strand = Plus / Plus
Query: 87 tatcctacttgattgagcataaatctgatttcgaaggtgtgttagaaggtgtattccact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 tatcctacttgattgagcataaatctgatttcgaaggtgtgttagaaggtgtattccact 7914
Query: 147 cctcgttacagactgaacctttcgttaaggaacaattaaagggtggttacggaccagtgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 cctcgttacagactgaacctttcgttaaggaacaattaaagggtggttacggaccagtgt 7974
Query: 207 tcgcagtcacttttttttcaaaggaacaatgtaggaaattccctcaattattgacgtgct 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 tcgcagtcactttaaattcaaaggaacaatgtaggaaattccctcaattattgacgtgct 8034
Query: 267 tccagcatgctacctccttaggtggtgttgaatctctcgttgaatggagagccttgacag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 tccagcatgctacctccttaggtggtgttgaatctctcgttgaatggagagccttgacag 8094
Query: 327 atccctacatcatccccaccttgatcagagtttctgttggtgtggaaaatgttgatgatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8095 atccctacatcatccccaccttgatcagagtttctgttggtgtggaaaatgttgatgatt 8154
Query: 387 tgattaaggatttcgctaacgctttgaagactttgcaaggagcaaagaattgagtcctct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8155 tgattaaggatttcgctaacgctttgaagactttgcaaggagcaaagaattgagtcctct 8214
Query: 447 caggttatactagcgtttgtgtcaccttttagagtatattgtatatatttgaacaataaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8215 caggttatactagcgtttgtgtcaccttttagagtatattgtatatatttgaacaataaa 8274
Query: 507 aatgcatttgatactcgtctttacctgatctgttggtgcggtttcaatatccaatctttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8275 aatgcatttgatactcgtctttacctgatctgttggtgcggtttcaatatccaatctttg 8334
Query: 567 tatattatttacgttaccctaattattgatttcgaacaatcatcggaaacatcataaacc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8335 tatattatttacgttaccctaattattgatttcgaacaatcatcggaaacatcataaacc 8394
Query: 627 tgtaaaattggaaagaatatgtaaacaatgacagaataaacaaacaacactacaatgtat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8395 tgtaaaattggaaagaatatgtaaacaatgacagaataaacaaacaacactacaaggtat 8454
Query: 687 tgatttacaagttactgtcgcactattaagagaat-atttcatttttgctgaatttaa-t 744
||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct: 8455 tgattcacaagtcactgtcgcactattaagagaatcatatcatttttgctgaatttaatt 8514
Query: 745 acaatttggcaat-aacgaagctgctc-gcaatgcctacgagttaac-aaaactttagac 801
||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||
Sbjct: 8515 acaatttggcaatcaacgaagctgctcggcaatgcctacgagtaaacaaaaacctaagac 8574
Query: 802 gaccaaagcgttcaaaaccacccgtaaagaacccatta-tgacagaatgtgtaagcgtgg 860
|||||||||| |||||||| || |||||| ||| || |||||||| ||||||||||||
Sbjct: 8575 gaccaaagcg-tcaaaacccaccagaaagaagccaatagtgacagaaggtgtaagcgtgg 8633
Query: 861 taaatctgatcattgcccaggagaacat-aaggatactcattttattggtttacccgctt 919
|| ||||||||| ||| || ||| |||| ||| |||||||| |||||| | ||||||||
Sbjct: 8634 tagatctgatcagtgcgcaagaggacataaagtatactcatattattgatatacccgctg 8693
Query: 920 ataaaa 925
||||||
Sbjct: 8694 ataaaa 8699
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7211
Number of Sequences: 1807
Number of extensions: 7211
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)