BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZD12RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1636 1620 0.0
>3x_Contig1636
Length = 15667
Score = 1620 bits (817), Expect = 0.0
Identities = 865/876 (98%), Gaps = 4/876 (0%)
Strand = Plus / Plus
Query: 50 cttcgcaccggcgtgtagaagtgttttgaatttttcgaaaactacgtcctcatcatcatc 109
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4160 cttcgcaccggcgtgtagaagtggattgaatttttcgaaaactacgtcctcatcatcatc 4219
Query: 110 ttcttcctcgttttcgatatcttcaccaacagccaatgatagatttatttgctctctaac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4220 ttcttcctcgttttcgatatcttcaccaacagccaatgatagatttatttgctctctaac 4279
Query: 170 aggttcaccttccaaatatccaggaggtaagtacctatgtgttctcaagatangt-cact 228
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct: 4280 aggttcaccttccaaatatccaggaggtaagtacctatgtgttctcaagacatgttcact 4339
Query: 229 gatagctctatctctgatgtcgttgatatcatccgtaaccacaaatagtaaatcgaaacg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4340 gatagctctatctctgatgtcgttgatatcatccgtaaccacaaatagtaaatcgaaacg 4399
Query: 289 agataatagagaatccggtagggcaatatttttatgtggatctttgttaacgtcatattg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4400 agataatagagaatccggtagggcaatatttttatgtggatctttgttaacgtcatattg 4459
Query: 349 accgaaaacagggtttgcagctgcgataactgaacaacgagcattcaatgttgtatgtat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4460 accgaaaacagggtttgcagctgcgataactgaacaacgagcattcaatgttgtatgtat 4519
Query: 409 accagcctttgcgattgttactgtttgttgttccataacttcatggatagcaactctatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 accagcctttgcgattgttactgtttgttgttccataacttcatggatagcaactctatc 4579
Query: 469 tacgtcggacatcttgtcaaactcatcgatacaaacgataccacgatctgccaacaccat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 tacgtcggacatcttgtcaaactcatcgatacaaacgataccacgatctgccaacaccat 4639
Query: 529 cgcacctgcttctaatcttctttcaccagtttctttatcagtagtgacggctgctgtcaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 cgcacctgcttctaatcttctttcaccagtttctttatcagtagtgacggctgctgtcaa 4699
Query: 589 accgacaccagaggaacctctacccgtagtggcaatagctaatgctgctgtgttcaacac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 accgacaccagaggaacctctacccgtagtggcaatagctaatgctgctgtgttcaacac 4759
Query: 649 aaatctaagcatttgagatttagcggtggatggatcaccaaccataaggatatttatgtc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 aaatctaagcatttgagatttagcggtggatggatcaccaaccataaggatatttatgtc 4819
Query: 709 acctcttagatgtgaaccgttgggtaaatttttttccacaccacccataagcattaatag 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 acctcttagatgtgaaccgttgggtaaatttttttccacaccacccataagcattaatag 4879
Query: 769 gatggctttcttaatgtgttcatggccatagatggatggtgctaacgactgggacaaagt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 gatggctttcttaatgtgttcatggccatagatggatggtgctaacgactgggacaaagt 4939
Query: 829 gtcgaaaatattataatgcattgatagcttattgaaatttctaatatcattatctgatag 888
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4940 gtcgaaaatattatcatgcattgatagcttattgatatttctaatatcattatctgatag 4999
Query: 889 cgttt-aacggcgga-acacactgtaaacctggcat 922
||||| ||||||||| |||| ||||| |||||||||
Sbjct: 5000 cgtttcaacggcggacacac-ctgtagacctggcat 5034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7437
Number of Sequences: 1807
Number of extensions: 7437
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)