BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE01FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1518 0.0
>3x_Contig1721
Length = 17834
Score = 1518 bits (766), Expect = 0.0
Identities = 784/790 (99%)
Strand = Plus / Plus
Query: 89 cttagtcaagatttgggatgccaagaattcgaaatcatagatgttaaccaaggaatcaat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16682 cttagtcaagatttgggatgccaagaattcgaaatcatagatgttaaccaaggaatcaat 16741
Query: 149 atcgggtaaagattgacgcaattgttcctttcttgccacatcttcgggagtttcacctgg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16742 atcgggtaaagattgacgcaattgttcctttcttgccacatcttcgggagtttcacctgg 16801
Query: 209 ggtcaatgcttctcagaccaagtcatcaggcattgtaccatctagtggaccaattctgtt 268
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16802 ggtcaatgcagcacagaccaagtcatcaggcattgtaccatctagtggaccaattctgtt 16861
Query: 269 ctctggagcaatgtatttttcgatgacatctggagcatgaattggagcaaagatcttggt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16862 ctctggagcaatgtatttttcgatgacatctggagcatgaattggagcaaagatcttggt 16921
Query: 329 cacatcttttcctgcgttgttctcaatgatagctggaccaccaggatgggcgctgatgaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16922 cacatcttttcctgcgttgttctcaatgatagctggaccaccaggatgggcgctgatgaa 16981
Query: 389 atcagtcaaattgtatacgtaaccctcaatgaccacccaacagtctttgggagaagagtg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16982 atcagtcaaattgtatacgtaaccctcaatgaccacccaacagtctttgggagaagagtg 17041
Query: 449 ctttgcgacttctgttggagaaacctttggtttcgtcatatcgaccttggcaccattttc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17042 ctttgcgacttctgttggagaaacctttggtttcgtcatatcgaccttggcaccattttc 17101
Query: 509 aacgctatcattgaattgagaaatcaatgcaataccaaccgaaccggcaacaagaaaggc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17102 aacgctatcattgaattgagaaatcaatgcaataccaaccgaaccggcaacaagaaaggc 17161
Query: 569 accaccagtgatgactttcttaccgaacgaaaacgcactatagccagacttagctgatct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17162 accaccagtgatgactttcttaccgaacgaaaacgcactatagccagacttagctgatct 17221
Query: 629 cccaaaacgcagagtagcactagacttatgaattggagatttactactggtgctagcaaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17222 cccaaaacgcagagtagcactagacttatgaattggagatttactactggtgctagcaaa 17281
Query: 689 tctcaacccactaacacggttcttaccaaaaactcttacggctgatctcatagtaatgac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17282 tctcaacccactaacacggttcttaccaaaaactcttacggctgatctcatagtaatgac 17341
Query: 749 gatgttgatacctaagggctttgttttctgattaaagattataccaaacaaatttaacct 808
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17342 gatgttgatacctaggggctttgttttctgattaaagattataccaaacaaatttaacct 17401
Query: 809 caaccgcactataaccaatttccaactgcgacatagctctacttatatatatatatatat 868
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 17402 caaccgcactataaccaattcccaactgcgacatagctctacttatatatatatatatac 17461
Query: 869 atatatatat 878
||||||||||
Sbjct: 17462 atatatatat 17471
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,032
Number of Sequences: 1807
Number of extensions: 14032
Number of successful extensions: 3454
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)