BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE01RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1451 0.0
>3x_Contig1303
Length = 8112
Score = 1451 bits (732), Expect = 0.0
Identities = 759/766 (99%), Gaps = 2/766 (0%)
Strand = Plus / Minus
Query: 57 tcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttcctatagt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 tcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttcctatagt 1699
Query: 117 gagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacacaggtttta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 gagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacacaggtttta 1639
Query: 177 agcttgttgtggtttttatttacaagaacgctaatcatattttctttacaagaaattcag 236
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1638 agcttgttgtggtttttatttacaagaacgctaatcataatcactttacaagaaattcag 1579
Query: 237 aaggaatttatcccaattttttcacaggtaaggactgggttttattataattattatttt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 aaggaatttatcccaattttttcacaggtaaggactgggttttattataattattatttt 1519
Query: 297 ttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgcataagtt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 ttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgcataagtt 1459
Query: 357 catctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcagataatgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 catctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcagataatgg 1399
Query: 417 gccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctgagatgaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 gccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctgagatgaa 1339
Query: 477 acagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagccggttca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 acagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagccggttca 1279
Query: 537 atcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttagaactatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 atcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttagaactatt 1219
Query: 597 cagaactgctggtgggtttcctgatcaagtaaactatatttttcttggtgactatgtaga 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 cagaactgctggtgggtttcctgatcaagtaaactatatttttcttggtgactatgtaga 1159
Query: 657 tcgtggttattacagtttggagacgttcacacttcttatgtgtttgaaagtgaaatatcc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tcgtggttattacagtttggagacgttcacacttcttatgtgtttgaaagtgaaatatcc 1099
Query: 717 ttccagaattactttggttagaggaaatcatgagtcgaggcanattacacaagtttatgg 776
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 1098 ttccagaattactttggttagaggaaatcatgagtcgaggcaaattacacaagtttat-g 1040
Query: 777 ggttttatgaggaatgtttaaataagtatggtttccacancggttt 822
||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1039 ggttttatgaggaatgtttaaataagtatgg-ttccacaacggttt 995
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8249
Number of Sequences: 1807
Number of extensions: 8249
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)