BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE02FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig729 1017 0.0
>3x_Contig729
Length = 2040
Score = 1017 bits (513), Expect = 0.0
Identities = 534/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 369 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 60
Query: 429 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 120
Query: 489 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 180
Query: 549 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 240
Query: 609 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 300
Query: 669 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 360
Query: 729 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 420
Query: 789 angaactgttcctgaatggtttcgcaggtatttgtaaatagaaactacttttggcgtttt 848
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 aggaactgttcctgaatggtttcgcaggtatttgtaaatagaaactacttttgtcgtttt 480
Query: 849 acctttgttaataggtatacaatttctt-aaatataaagctctacggttcataactgtga 907
||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 481 accttgtttaataggtatacaatttcttaaaatataaagctctacggttcagaactgtga 540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5225
Number of Sequences: 1807
Number of extensions: 5225
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)