BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE02RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1626 0.0
>3x_Contig1496
Length = 9544
Score = 1626 bits (820), Expect = 0.0
Identities = 848/856 (99%), Gaps = 1/856 (0%)
Strand = Plus / Plus
Query: 48 ttatctctcaattggaatggctttaccagcggccttgggtgttggctgtggtatgagaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 ttatctctcaattggaatggctttaccagcggccttgggtgttggctgtggtatgagaga 8295
Query: 108 ctatccaagatcccatattgtagatcaagcacttgttcctaaagattacattcctagact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 ctatccaagatcccatattgtagatcaagcacttgttcctaaagattacattcctagact 8355
Query: 168 aatcttatgtgaaggagatggtgctgcccaaatgactatccaagaatttttttcatacat 227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8356 aatcttatgtgaaggagatggtgctgcccaaatgactatccaagaatttgcatcatacat 8415
Query: 228 tcgttataagatcccaatggaaatacttgtatggaacaataacggttatactgttgagag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tcgttataagatcccaatggaaatacttgtatggaacaataacggttatactgttgagag 8475
Query: 288 agctataaatggccctactaggagttacaatgacattgctcctttcaaatggacagcatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 agctataaatggccctactaggagttacaatgacattgctcctttcaaatggacagcatt 8535
Query: 348 attgaacgtctttggcgacttcgaaaataaattcaacgagtctgttaccgtcgagaaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8536 attgaacgtctttggcgacttcgaaaataaattcaacgagtctgttaccgtcgagaaaaa 8595
Query: 408 cgatgagttagttcaacttctcaataaatggaaatcttgtaaggaaagggcaaacatcaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8596 cgatgagttagttcaacttctcaataaatggaaatcttgtaaggaaagggcaaacatcaa 8655
Query: 468 attagctgaagttatgcttccagtaatggatataccacaagaattgaatgcaatgctagt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8656 attagctgaagttatgcttccagtaatggatataccacaagaattgaatgcaatgctagt 8715
Query: 528 caatggaaaaccaaattgaagtcaagccaacatgtcagtttataactttttccttctttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8716 caatggaaaaccaaattgaagtcaagccaacatgtcagtttataactttttccttctttc 8775
Query: 588 catggcaagaagtgataatgtaattgtctataaatttgaatgttgaagaatgtgaaaacg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8776 catggcaagaagtgataatgtaattgtctataaatttgaatgttgaagaatgtgaaaacg 8835
Query: 648 gtaaatagtttaagtcttattctttaaatgagggcgtaattcttgattaaaccagtgatt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8836 gtaaatagtttaagtcttattctttaaatgagggcgtaattcttgattaaaccagtgatt 8895
Query: 708 tgaggtcagacataagttataacttgaattgccttactgaatagaggcatatcgtaatat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8896 tgaggtcagacataagttataacttgaattgccttactgaatagaggcatatcgtaatat 8955
Query: 768 ttttatttttataggcctttttgggaatgcgagtccaatttaaagttatatgttgctaaa 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8956 ttttatttttataggcctttttgggaatgcgagtccaatttaaagttatatgttgctaaa 9015
Query: 828 ttgtttagaggaaatatcaaacttcgctaaactctctagt-aatgttggagagtagactt 886
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 9016 ttgtttagaggaaatatcaaacttcgctaaactctctagtaaatgttgaggagtagactt 9075
Query: 887 ttcgtcaggcatcttt 902
||||||| | ||||||
Sbjct: 9076 ttcgtcatggatcttt 9091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7433
Number of Sequences: 1807
Number of extensions: 7433
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)