BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE03FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1534 0.0
>3x_Contig1697
Length = 16220
Score = 1534 bits (774), Expect = 0.0
Identities = 839/854 (98%), Gaps = 5/854 (0%)
Strand = Plus / Plus
Query: 85 caccggaaaagatcagagttccttctgtcctgcagtcactacgtatttcatacggacatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10474 caccggaaaagatcagagttccttctgtcctgcagtcactacgtatttcatacggacatg 10533
Query: 145 aagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacccaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10534 aagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacccaa 10593
Query: 205 ttccccttccccatttttaacaattattgtttgttttgcaccctccttctgtagttactg 264
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10594 ttccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagttactg 10653
Query: 265 ctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacatctc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10654 ctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacatctc 10713
Query: 325 ttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaaaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10714 ttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaaaaa 10773
Query: 385 cacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgttaaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10774 cacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgttaaga 10833
Query: 445 agttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgcagta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10834 agttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgcagta 10893
Query: 505 tcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctactaca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10894 tcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctactaca 10953
Query: 565 ggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccattct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10954 ggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccattct 11013
Query: 625 cataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatctgct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11014 cataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatctgct 11073
Query: 685 ccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaacaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11074 ccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaacaa 11133
Query: 745 caaaaggccatcattcagcacttgttgatcactaagaattctgctccc-agaaaga-tat 802
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 11134 caaaaggccatcattcagcacttgttgatcactaagaattctgctcccaagaaagattat 11193
Query: 803 tcacacgtcccatgcaagtttttcgtgcaagg-aattgtcaagcgggagattcctgtccc 861
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11194 tcacacgtcccatgcaagtttttcgtgcaaggaaattgtcaagcgggagattcctgtccc 11253
Query: 862 ttctctcnacga-ttggacaattctacgagtgaacaagtatgttagttttttcagagagg 920
||||||| |||| ||| |||||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 11254 ttctctc-acgatttgaacaattctacgagtgaacaagtatgtaagtattttcagaaagg 11312
Query: 921 atattgcaagtttg 934
||||||||||||
Sbjct: 11313 gaattgcaagtttg 11326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7598
Number of Sequences: 1807
Number of extensions: 7598
Number of successful extensions: 189
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)