BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1651 0.0
>3x_Contig1771
Length = 25932
Score = 1651 bits (833), Expect = 0.0
Identities = 882/897 (98%), Gaps = 2/897 (0%)
Strand = Plus / Plus
Query: 45 gctttctt-aactctttcgaagactttttgggcggcgattttatccacgcttctatattt 103
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9111 gctttcttcaactctttcgaagaccttttgggcggcgattttatccacgcttctatattt 9170
Query: 104 tcctcagtaagaagttttaactgttttggtttagtccaataataggtagaatcgttaaaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9171 tcctcagtaagaagttttaactgttttggtttagtccaataataggtagaatcgttaaaa 9230
Query: 164 aatgccacagcaacttgaccaacgttctccttcgccttcagcacactcttacttattatc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 9231 aatgccacagcaacttgaccaacgttctccttcgccttcagcacactcttactcaatatc 9290
Query: 224 cgttgaggaacaactacagctggccatggttcgtaactgcccacggtgcaaagaaccagg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9291 cgttgaggaacaactacagctggccatggttcgtaactgcccacggtgcaaagaaccagg 9350
Query: 284 tcaccagtaactaaaagcccgtctgtcatattttgcttaaatagattgtgtattcggatt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9351 tcaccagtaactaaaagcccgtctgtcatattttgcttaaatagattgtgtattcggatt 9410
Query: 344 ggtaaaatctgtaagtataatggaaaggaaactaaaaccctaaatgtcagggcgtaaaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411 ggtaaaatctgtaagtataatggaaaggaaactaaaaccctaaatgtcagggcgtaaaga 9470
Query: 404 tcaaatagtaaactctgatatctctctttctcagtttcttgagcactcaataggtaaaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9471 tcaaatagtaaactctgatatctctctttctcagtttcttgagcactcaataggtaaaca 9530
Query: 464 caaataacggtttcgacagaaagaatgctaaacgctagaatagaagctttaaaatcttac 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9531 caaataacggtttcgacagaaagaatgctaaacgctagaatagaagctttaaaatcttac 9590
Query: 524 gctctaacttcgcactggcaacacaaatagcaaaggaaagaagaggccgtataacagaat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9591 gctctaacttcgcactggcaacacaaatagcaaaggaaagaagaggccgtataacagaat 9650
Query: 584 taacttgacctccttccctaaatgaactgagatgaaaacgaaaacaaaactcttaagcta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9651 taacttgacctccttccctaaatgaactgagatgaaaacgaaaacaaaactcttaagcta 9710
Query: 644 ccagtaatcacttttctcacacacaacaccacagtaatagctgcgtgtgttctgaccagt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9711 ccagtaatcacttttctcacacacaacaccacagtaatagctgcgtgtgttctgaccagt 9770
Query: 704 gaaagactgtttggacgaaatatgaatgggaacttcggcaatcaaaattccatatcaact 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9771 gaaagactgtttggacgaaatatgaatgggaacttcggcaatcaaaattccatatcaact 9830
Query: 764 gctcaagaagcatatattgaatataatttgaaataattgattgtnttgttttggataaaa 823
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9831 gctcaagaagcatatattgaatataatttgaaataattgattgttttgttttggataaaa 9890
Query: 824 aaaaagctttaaggtcgggaaatggnnatagtaattaggaattaaaggcatacgntatta 883
|||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct: 9891 aaaaagctttaaggtcggaaaatggaataagtaattaggaattaaaggcatacgtattta 9950
Query: 884 gaaaggtaactttacaagatcaatgaacgcacattagcagttgacgaaatgcgtttt 940
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9951 gaagggtaactttacaagatcaatgaacgcacattagcagttgacg-aatgcgtttt 10006
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7185
Number of Sequences: 1807
Number of extensions: 7185
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)