BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZE04FM1.SCF screened BAC_end
         (898 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1617                                                        1594   0.0  
3x_Contig1806                                                         103   6e-22

>3x_Contig1617 
          Length = 15119

 Score = 1594 bits (804), Expect = 0.0
 Identities = 811/812 (99%), Gaps = 1/812 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   gaatctgaaaacaatagagactataattcttatcgttttcaccaattatctcggcagaaa 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 gaatctgaaaacaatagagactataattcttatcgttttcaccaattatctcggcagaaa 4710

                                                                        
Query: 147  gttttctttgagattagaaatttaattggacgattatacgttaatatctttgaacactgg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4711 gttttctttgagattagaaatttaattggacgattatacgttaatatctttgaacactgg 4770

                                                                        
Query: 207  ttggtgtcttactttcgtttgaattacgttgttacactttgataaacacacggggagtga 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4771 ttggtgtcttactttcgtttgaattacgttgttacactttgataaacacacggggagtga 4830

                                                                        
Query: 267  ctgagaataaagttagtattatttcataaatcaagatgagcagtgttgcagcatcgcaaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4831 ctgagaataaagttagtattatttcataaatcaagatgagcagtgttgcagcatcgcaaa 4890

                                                                        
Query: 327  ataaaatcaacgatttactggaagcaatcaggcaagagtttgccaatgtttcgcaagaag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4891 ataaaatcaacgatttactggaagcaatcaggcaagagtttgccaatgtttcgcaagaag 4950

                                                                        
Query: 387  caaactcttaccgtttgcaaaaccaaaaggattatgattttaagattaatcaacaattag 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951 caaactcttaccgtttgcaaaaccaaaaggattatgattttaagattaatcaacaattag 5010

                                                                        
Query: 447  cagaaatgcaacaggttagaaataccgtttatgagttggaattgactcacagaaaaatga 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5011 cagaaatgcaacaggttagaaataccgtttatgagttggaattgactcacagaaaaatga 5070

                                                                        
Query: 507  aagatgcgtatgaggaggagattagcagattgaagttggaattagaacaaaaagatcgcc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5071 aagatgcgtatgaggaggagattagcagattgaagttggaattagaacaaaaagatcgcc 5130

                                                                        
Query: 567  aattggcctctattgcccatggaagtaccgttggtaatgttccaggtcaagttcctcagc 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5131 aattggcctctattgcccatggaagtaccgttggtaatgttccaggtcaagttcctcagc 5190

                                                                        
Query: 627  ttagtagaaattctggtgctcagggaaatgctaacattgcgccaccaaatattccgcaac 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5191 ttagtagaaattctggtgctcagggaaatgctaacattgcgccaccaaatattccgcaac 5250

                                                                        
Query: 687  caatggtttcgcaaactgtaggtactggtatggccccacaaatggctcctttgaacactc 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 caatggtttcgcaaactgtaggtactggtatggccccacaaatggctcctttgaacactc 5310

                                                                        
Query: 747  aacatcctactcagcaaactaagtctaatgctggagagcaagcggccgctaatttggctc 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5311 aacatcctactcagcaaactaagtctaatgctggagagcaagcggccgctaatttggctc 5370

                                                                        
Query: 807  ctgtcattcagcagcagcaacaacctcagcaac-attaccaccacaacagcagcagcaac 865
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5371 ctgtcattcagcagcagcaacaacctcagcaacaattaccaccacaacagcagcagcaac 5430

                                            
Query: 866  agcagcagcagcaacagtctaacatcccagtt 897
            ||||||||||||||||||||||||||||||||
Sbjct: 5431 agcagcagcagcaacagtctaacatcccagtt 5462


>3x_Contig1806 
          Length = 53694

 Score =  103 bits (52), Expect = 6e-22
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                         
Query: 553   acaaaaagatcgccaattggcctctattgcccatggaagtaccgttggtaatgttccagg 612
             |||||| ||||| ||||||||||||  |||||  |||||||||||||||| |||||||||
Sbjct: 40969 acaaaatgatcgtcaattggcctcttctgccctaggaagtaccgttggtattgttccagg 41028

                                         
Query: 613   tcaagttcctcagcttagtagaaattct 640
             |||| || ||||||||||||||||||||
Sbjct: 41029 tcaatttactcagcttagtagaaattct 41056


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7854
Number of Sequences: 1807
Number of extensions: 7854
Number of successful extensions: 451
Number of sequences better than 1.0e-20: 2
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)