BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE04RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1436 1059 0.0
3x_Contig471 246 7e-65
>3x_Contig1436
Length = 9951
Score = 1059 bits (534), Expect = 0.0
Identities = 548/550 (99%), Gaps = 2/550 (0%)
Strand = Plus / Minus
Query: 48 tggttgatgcagggaaaccagaggaattattgtcttcgaagcacgctgagtgtatgttag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tggttgatgcagggaaaccagaggaattattgtcttcgaagcacgctgagtgtatgttag 500
Query: 108 atacgccgataactgcttatagatggtgttcgttgttgttgcccgatggtgacgatgact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atacgccgataactgcttatagatggtgttcgttgttgttgcccgatggtgacgatgact 440
Query: 168 tcttttcatcagatctctctgatgaaaaattggaaatcacatttggttacatcaaagacc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcttttcatcagatctctctgatgaaaaattggaaatcacatttggttacatcaaagacc 380
Query: 228 cattccttattgcattgtccgagaaggatgaatgctatccaaataatgggaaaccgcttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattccttattgcattgtccgagaaggatgaatgctatccaaataatgggaaaccgcttg 320
Query: 288 aactattgcaaagatggcaatgtttcgtggataagaagttatggtcgaagaattccggtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aactattgcaaagatggcaatgtttcgtggataagaagttatggtcgaagaattccggtc 260
Query: 348 ttatcaagggtgcaactcatgccgttccggaagaagattcacaaaaggagttattcaaaa 407
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttatcaagggtgcaactcatg-cgttccggaagaagattcacaaaaggagttattcaaaa 201
Query: 408 tggtcaccggtttcattaaggaaaatggattttgaa-cttttgatttgccacttgccgca 466
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 200 tggtcaccggtttcattaaggaaaatggattttgaagcttttgatttgccacttgccgca 141
Query: 467 ttgagtcaaatgagatctagtttaattcgatctagtgtacgtgtatatagccttaacgta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttgagtcaaatgagatctagtttaattcgatctagtgtacgtgtatatagccttaacgta 81
Query: 527 tcgaatgagtcatatggcctatctctatctctatctatctttctatccgcatatctatct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tcgaatgagtcatatggcctatctctatctctatctatctttctatccgcatatctatct 21
Query: 587 ttttttctag 596
||||||||||
Sbjct: 20 ttttttctag 11
>3x_Contig471
Length = 2964
Score = 246 bits (124), Expect = 7e-65
Identities = 173/187 (92%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 707 cacattcctattactgtgaacatcatcccgaacaccatccaaattctgaattcattatgt 766
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cacattcctattactgtgaacatcatccgaaacaccatccaaattctgaattcattatgt 60
Query: 767 ctactttcaaacctagaaacggttcgatttttacccnaccaactgttgactcaataggac 826
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 61 ctactttcaacctaagaaacggttcgatttttaccaaaccaactgttgactcaatagaac 120
Query: 827 cattgcaatttcattttgaagggttctgatcaggcagtgactgcgtttccaatctttttc 886
||||||||||||| |||||| |||||||||||| |||||||||||| |||||| |||||
Sbjct: 121 cattgcaatttca-tttgaaaggttctgatcagcaagtgactgcgttcccaatc-ttttc 178
Query: 887 agcggac 893
|||||||
Sbjct: 179 agcggac 185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6385
Number of Sequences: 1807
Number of extensions: 6385
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)