BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1700 1594 0.0
>3x_Contig1700
Length = 16332
Score = 1594 bits (804), Expect = 0.0
Identities = 843/854 (98%), Gaps = 2/854 (0%)
Strand = Plus / Minus
Query: 43 gcttcctcgtttctctagtctacctcatatactttctttttttctttttccggttttaat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4748 gcttcctcgtttctctagtctacctcatatactttctttttttctttttccggttttaat 4689
Query: 103 ttgggtttttaagtggatcatgctcgaagctcgaagatgcacacggctgaaccgtgttga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4688 ttgggtttttaagtggatcatgctcgaagctcgaagatgcacacggctgaaccgtgttga 4629
Query: 163 aagagagagacaagggaaaaaccagtgtagtttccgtagtaccaaggctaatttattccg 222
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 4628 aagagagagacaagggaaaaaccagtgtagtttccgtagtaccaaggctaagccaaaccg 4569
Query: 223 gtggggtactctaaggaatggagggagaaatgggaaaaaaagaaaaacaggggctgaatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4568 gtggggtactctaaggaatggagggagaaatgggaaaaaaagaaaaacaggggctgaatt 4509
Query: 283 aggcaaaataatccactaggaagaatggtagttatgtatgtatttatctgtgtcatcgag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4508 aggcaaaataatccactaggaagaatggtagttatgtatgtatttatctgtgtcatcgag 4449
Query: 343 aggtattttttcaattttaacttcttttttttgtttttccttttgttcctctcagtgtct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4448 aggtattttttcaattttaacttcttttttttgtttttccttttgttcctctcagtgtct 4389
Query: 403 gtgagggaaaaactgggagcgatgtagtagcttttgaaatacgtaatcttcaagatccca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388 gtgagggaaaaactgggagcgatgtagtagcttttgaaatacgtaatcttcaagatccca 4329
Query: 463 ttagtttttgattatcttatccaagacagggacacaggtatgtttcatttggtgcctgcg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4328 ttagtttttgattatcttatccaagacagggacacaggtatgtttcatttggtgcctgcg 4269
Query: 523 gcactaatttttcttggtttacttgtatttcagtcttttgactattaatgcttctgctat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4268 gcactaatttttcttggtttacttgtatttcagtcttttgactattaatgcttctgctat 4209
Query: 583 cctgctgggcctaaaatttgcctgcccttgctgtttgacgaacggaaaccaagagcgaaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4208 cctgctgggcctaaaatttgcctgcccttgctgtttgacgaacggaaaccaagagcgaaa 4149
Query: 643 aaatcagactactgacagggttcagttatggcaattttttctattaattctagctttgaa 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4148 aaatcagactactgacagggttcagttatggcaattttttctattaattctagctttgaa 4089
Query: 703 aaacgggccggtatcatagtaagttattttacagacctangcttttcgctgacgtggtat 762
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4088 aaacgggccggtatcatagtaagttattttacagacctaggcttttcgctgacgtggtat 4029
Query: 763 ttattctcatttcttagaaagattcgcacggngttaatgattgggatggagctaggtgat 822
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4028 ttattctcatttcttagaaagattcgcacggggttaatgattgggatggagctaggtgat 3969
Query: 823 actccttactctattcattctcggtgggacactg-agagtgatcgatacacgaacaactc 881
||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct: 3968 actccttactctattcattctcggt-ggaaactgaagagtgatcgatacacgaacaactc 3910
Query: 882 acgatgattggttt 895
|||||||| |||||
Sbjct: 3909 acgatgatgggttt 3896
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8740
Number of Sequences: 1807
Number of extensions: 8740
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)