BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE06FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1548 0.0
>3x_Contig1697
Length = 16220
Score = 1548 bits (781), Expect = 0.0
Identities = 817/828 (98%), Gaps = 1/828 (0%)
Strand = Plus / Minus
Query: 88 caaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgcac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 caaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgcac 10406
Query: 148 agcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 agcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaaca 10346
Query: 208 agataatcacatcatcgtgacaagagctgtacctcttccagctaaactagcagacaataa 267
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10345 agataatcacatca-cgtgacaagagctgtacctcttccagctaaactagcagacaataa 10287
Query: 268 cttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10286 cttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaa 10227
Query: 328 tgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10226 tgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtac 10167
Query: 388 ttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10166 ttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaat 10107
Query: 448 ttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10106 ttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtatt 10047
Query: 508 catgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10046 catgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccg 9987
Query: 568 acgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgagggctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9986 acgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgagggctt 9927
Query: 628 tcctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgtaagtt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926 tcctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgtaagtt 9867
Query: 688 ccggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatgagagt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9866 ccggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatgagagt 9807
Query: 748 ttacgcagtgattttgtgctgctactgctgggttctttggtccctgtgagaatgcttttg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9806 ttacgcagtgattttgtgctgctactgctgggttctttggtccctgtgagaatgcttttg 9747
Query: 808 gactgtcttggttactgtttttatttgttttggcggttgataggattgacngtggtcagg 867
|||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 9746 gactgtcttgtttactgtttttatttgttttgtcggtgaataggattgacgttggtcagg 9687
Query: 868 ggatgatagacgatggacaaccaaacgtttctatattataatatatat 915
| ||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct: 9686 gaatgatagacgaaggacaaccagacgtatctatattataatatatat 9639
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,048
Number of Sequences: 1807
Number of extensions: 17048
Number of successful extensions: 2535
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)