BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZE06RM1.SCF screened BAC_end (940 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig600 1628 0.0 >3x_Contig600 Length = 2338 Score = 1628 bits (821), Expect = 0.0 Identities = 879/893 (98%), Gaps = 5/893 (0%) Strand = Plus / Plus Query: 51 acttctagctcttcttaaccttctttt-aacacttcgttttttgtcttggtcttgggctg 109 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1032 acttctagctcttcttaaccttcttttcaacacttcgttttttgtcttggtcttgggctg 1091 Query: 110 tgaattatccacagctttacgtgtacgtaaccgaagttcatcctgtagctgtttctgttg 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 tgaattatccacagctttacgtgtacgtaaccgaagttcatcctgtagctgtttctgttg 1151 Query: 170 tccctggtagtacaaagctgcgaaagaatccgtattcgccagctttatatttatctttct 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 tccctggtagtacaaagctgcgaaagaatccgtattcgccagctttatatttatctttct 1211 Query: 230 cccattaatcttgagcttgccttgaaattctataaggaacgtattacaactgtctgagtc 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 cccattaatcttgagcttgccttgaaattctataaggaacgtattacaactgtctgagtc 1271 Query: 290 cttaaaagtgacgaaacaagacctcctcaagggtcttgagccataccttgatacctctat 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 cttaaaagtgacgaaacaagacctcctcaagggtcttgagccataccttgatacctctat 1331 Query: 350 gatctgatacttttcatcgagtactggtgtaaccgcatcagcctcactagtttctttctt 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 gatctgatacttttcatcgagtactggtgtaaccgcatcagcctcactagtttctttctt 1391 Query: 410 cgagttcagatcgaatcttgtactaacatcatttgaaatagaacgatgatctgaattaac 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 cgagttcagatcgaatcttgtactaacatcatttgaaatagaacgatgatctgaattaac 1451 Query: 470 acttgatagtagtaaggctctgaatttggacaatgagtcgggcctcgacggtagattcga 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1452 acttgatagtagtaaggctctgaatttggacaatgagtcgggcctcgacggtagattcga 1511 Query: 530 cagatataaggtactgaccattgcttgccgatagatactagctttgtatggcatgtgtaa 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1512 cagatataaggtactgaccattgcttgccgatagatactagctttgtatggcatgtgtaa 1571 Query: 590 taacctaatagagaaggatatcacaacctattaacaaatagtccatacgtattagtatta 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1572 taacctaatagagaaggatatcacaacctattaacaaatagtccatacgtattagtatta 1631 Query: 650 gtaaatttgttgacaatgaaagttgttgttacgttaagttaagattatatgaataactaa 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1632 gtaaatttgttgacaatgaaagttgttgttacgttaagttaagattatatgaataactaa 1691 Query: 710 atactaaatagaaatgtaaatacagtgagaacaanacaaaanaaaacgaacagagaaact 769 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct: 1692 atactaaatagaaatgtaaatacagtgagaacaaaacaaaaaaaaacgaacagagaaact 1751 Query: 770 aaatccacattaattgagagttctatctattagaaaatgcanacttccactaaatgggaa 829 ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| Sbjct: 1752 aaatccacattaattgagagttctatctattagaaaatgcaaactccaactaaatgggaa 1811 Query: 830 aacagatnacctcttttattttttttt-atgtttgatattcgagtctttttnctttggtt 888 ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||| Sbjct: 1812 aacagataacctcttttatttttttttaatgtttgatattcgagtcttttt-cttttgtt 1870 Query: 889 agg-ttatattcatcatttcaatgaattaaagaaggcttcttatttttgttgc 940 ||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct: 1871 aggtttatattcatcatttcaatgaataaaagaa-gcttcttattttggttgc 1922 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7393 Number of Sequences: 1807 Number of extensions: 7393 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 940 length of database: 10,358,551 effective HSP length: 16 effective length of query: 924 effective length of database: 10,329,639 effective search space: 9544586436 effective search space used: 9544586436 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)