BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZE06RM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig600                                                         1628   0.0  

>3x_Contig600 
          Length = 2338

 Score = 1628 bits (821), Expect = 0.0
 Identities = 879/893 (98%), Gaps = 5/893 (0%)
 Strand = Plus / Plus

                                                                        
Query: 51   acttctagctcttcttaaccttctttt-aacacttcgttttttgtcttggtcttgggctg 109
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1032 acttctagctcttcttaaccttcttttcaacacttcgttttttgtcttggtcttgggctg 1091

                                                                        
Query: 110  tgaattatccacagctttacgtgtacgtaaccgaagttcatcctgtagctgtttctgttg 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tgaattatccacagctttacgtgtacgtaaccgaagttcatcctgtagctgtttctgttg 1151

                                                                        
Query: 170  tccctggtagtacaaagctgcgaaagaatccgtattcgccagctttatatttatctttct 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 tccctggtagtacaaagctgcgaaagaatccgtattcgccagctttatatttatctttct 1211

                                                                        
Query: 230  cccattaatcttgagcttgccttgaaattctataaggaacgtattacaactgtctgagtc 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 cccattaatcttgagcttgccttgaaattctataaggaacgtattacaactgtctgagtc 1271

                                                                        
Query: 290  cttaaaagtgacgaaacaagacctcctcaagggtcttgagccataccttgatacctctat 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 cttaaaagtgacgaaacaagacctcctcaagggtcttgagccataccttgatacctctat 1331

                                                                        
Query: 350  gatctgatacttttcatcgagtactggtgtaaccgcatcagcctcactagtttctttctt 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 gatctgatacttttcatcgagtactggtgtaaccgcatcagcctcactagtttctttctt 1391

                                                                        
Query: 410  cgagttcagatcgaatcttgtactaacatcatttgaaatagaacgatgatctgaattaac 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 cgagttcagatcgaatcttgtactaacatcatttgaaatagaacgatgatctgaattaac 1451

                                                                        
Query: 470  acttgatagtagtaaggctctgaatttggacaatgagtcgggcctcgacggtagattcga 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 acttgatagtagtaaggctctgaatttggacaatgagtcgggcctcgacggtagattcga 1511

                                                                        
Query: 530  cagatataaggtactgaccattgcttgccgatagatactagctttgtatggcatgtgtaa 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 cagatataaggtactgaccattgcttgccgatagatactagctttgtatggcatgtgtaa 1571

                                                                        
Query: 590  taacctaatagagaaggatatcacaacctattaacaaatagtccatacgtattagtatta 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 taacctaatagagaaggatatcacaacctattaacaaatagtccatacgtattagtatta 1631

                                                                        
Query: 650  gtaaatttgttgacaatgaaagttgttgttacgttaagttaagattatatgaataactaa 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 gtaaatttgttgacaatgaaagttgttgttacgttaagttaagattatatgaataactaa 1691

                                                                        
Query: 710  atactaaatagaaatgtaaatacagtgagaacaanacaaaanaaaacgaacagagaaact 769
            |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1692 atactaaatagaaatgtaaatacagtgagaacaaaacaaaaaaaaacgaacagagaaact 1751

                                                                        
Query: 770  aaatccacattaattgagagttctatctattagaaaatgcanacttccactaaatgggaa 829
            ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1752 aaatccacattaattgagagttctatctattagaaaatgcaaactccaactaaatgggaa 1811

                                                                        
Query: 830  aacagatnacctcttttattttttttt-atgtttgatattcgagtctttttnctttggtt 888
            ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct: 1812 aacagataacctcttttatttttttttaatgtttgatattcgagtcttttt-cttttgtt 1870

                                                                 
Query: 889  agg-ttatattcatcatttcaatgaattaaagaaggcttcttatttttgttgc 940
            ||| ||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct: 1871 aggtttatattcatcatttcaatgaataaaagaa-gcttcttattttggttgc 1922


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7393
Number of Sequences: 1807
Number of extensions: 7393
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)