BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZE07FM1.SCF screened BAC_end
         (896 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1546                                                        1526   0.0  

>3x_Contig1546 
          Length = 12922

 Score = 1526 bits (770), Expect = 0.0
 Identities = 788/794 (99%)
 Strand = Plus / Minus

                                                                       
Query: 86  aagatcattagtcaatgtcgaactgggcaccataatattgctatttaaagttttgccctg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 aagatcattagtcaatgtcgaactgggcaccataatattgctatttaaagttttgccctg 893

                                                                       
Query: 146 tggtaaattcaatagatcaaatattctctcgttgtaaatttccaaataggatactctgac 205
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tggtaaattcaatagttcaaatattctctcgttgtaaatttccaaataggatactctgac 833

                                                                       
Query: 206 agtaaacttttttttaggtaatcccacattgatacgatcgaaaatagtgtcaacgcacat 265
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 agtaaactttttgcgaggtaatcccacattgatacgatcgaaaatagtgtcaacgcacat 773

                                                                       
Query: 266 gggtattataccaggacctgatttggatccactcatggtatatgtcttacctgaaccagt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gggtattataccaggacctgatttggatccactcatggtatatgtcttacctgaaccagt 713

                                                                       
Query: 326 cataccataagcgaaaattgtacaattaaatccctcgaataatttatctatcataggcaa 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cataccataagcgaaaattgtacaattaaatccctcgaataatttatctatcataggcaa 653

                                                                       
Query: 386 tgccatagtctcatatactcgatcgttattcatctccggactgaaaacatggtcgaagtt 445
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgccatagtgtcatatactcgatcgttattcatctccggactgaaaacatggtcgaagtt 593

                                                                       
Query: 446 aaattccccaaactcttcatgaataatggagttgttatttacgtgccaagaatcttgttt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaattccccaaactcttcatgaataatggagttgttatttacgtgccaagaatcttgttt 533

                                                                       
Query: 506 tccatgagtaggcttgattcttacccctaccgaaatggtaccctggtatgaacttctccc 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tccatgagtaggcttgattcttacccctaccgaaatggtaccctggtatgaacttctccc 473

                                                                       
Query: 566 gccacgaattggagaagcggccttcgtagaagaacttcttgctggtgaagaacattgact 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gccacgaattggagaagcggccttcgtagaagaacttcttgctggtgaagaacattgact 413

                                                                       
Query: 626 cgaagatgacgaggaagttgatcttggccttactgttgatgaagttcttagatttggtgt 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgaagatgacgaggaagttgatcttggccttactgttgatgaagttcttagatttggtgt 353

                                                                       
Query: 686 gctgggaggtctcatcaatcttttgggtgaattgtacgatgatgtatggagtggaagtgc 745
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gctgggaggtctcatcaatcttttgggtgaattgtacgatgatgtatggagtggaagtgc 293

                                                                       
Query: 746 cactggtttggtaatcatgatcgattggctatctcaagggtgtgttactctgctatattt 805
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cactggtttggtaatcatgatcgattggctatctcaagggtgtgttactctgctatattt 233

                                                                       
Query: 806 tcgttgcaatgcaaatccttgcgtaatccaatattgtgtcctaatatgattgtttaatca 865
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcgttgcaatgcaaatccttgcgtaatccaatattgtgtcctaatatgattgtttaatca 173

                         
Query: 866 caaattataacagt 879
           ||||| ||||||||
Sbjct: 172 caaataataacagt 159


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5857
Number of Sequences: 1807
Number of extensions: 5857
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)