BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE07RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1021 1643 0.0
>3x_Contig1021
Length = 3847
Score = 1643 bits (829), Expect = 0.0
Identities = 851/856 (99%), Gaps = 3/856 (0%)
Strand = Plus / Minus
Query: 48 tttctacagaagttcaagcaagtgataccaaatagtaatacatatacagaaatgaaaatc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787 tttctacagaagttcaagcaagtgataccaaatagtaatacatatacagaaatgaaaatc 3728
Query: 108 gaaaccattataagaggtcctcaagaaaagctaatgaagataaaactgatactggagaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727 gaaaccattataagaggtcctcaagaaaagctaatgaagataaaactgatactggagaga 3668
Query: 168 ttgtggcaatgcaagacgtggtcaacgccagaaattgaaaatgacgctcaaaaaaattac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 ttgtggcaatgcaagacgtggtcaacgccagaaattgaaaatgacgctcaaaaaaattac 3608
Query: 228 acaaatattatggaaattgtggattcttttggtaaactagattcttccaccatgagtgcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 acaaatattatggaaattgtggattcttttggtaaactagattcttccaccatgagtgcc 3548
Query: 288 tataacacaagagtgtttactccctccggaaagattttaaccgaattagctaaaggctgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 tataacacaagagtgtttactccctccggaaagattttaaccgaattagctaaaggctgg 3488
Query: 348 ccacttgaactgcaatataagtggttgaagaggcgaattgttggtgtttttgacgtgatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 ccacttgaactgcaatataagtggttgaagaggcgaattgttggtgtttttgacgtgatt 3428
Query: 408 gatgcagataataattcaagaagagatttattggttattttcagcgactatatcgtgata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 gatgcagataataattcaagaagagatttattggttattttcagcgactatatcgtgata 3368
Query: 468 ttgagcattgtcgatgctgaaaagtactactcggagaccgataataaaccacttatatct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 ttgagcattgtcgatgctgaaaagtactactcggagaccgataataaaccacttatatct 3308
Query: 528 gatgttctcatgaactccctaatcaatgaagttgcactgccatcaaagattcctaaatta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 gatgttctcatgaactccctaatcaatgaagttgcactgccatcaaagattcctaaatta 3248
Query: 588 caagtagtgtcgcattgctatattgataggattctaacgtccactacaaaggataactct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3247 caagtagtgtcgcattgctatattgataggattctaacgtccactacaaaggataactct 3188
Query: 648 atcatccttactttcttggatcccaaacaaccggaaagttttgtatacaagctcgcctct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3187 atcatccttactttcttggatcccaaacaaccggaaagttttgtatacaagctcgcctct 3128
Query: 708 tctaaaatgaaggcatctcacattgaagaattgtgtacaaaagcaaccattctggaaaaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3127 tctaaaatgaaggcatctcacattgaagaattgtgtacaaaagcaaccattctggaaaaa 3068
Query: 768 gtgactgccttccatttattcaaatcaaaccgttgcaattttaacatctatttcacggcg 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3067 gtgactgccttccatttattcaaatcaaaccgttgcaattttaacatctatttcacggcg 3008
Query: 828 catgagctggaagcctatcaaaatgaaacgatcaaatcacgatttcactttgtttt--aa 885
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 3007 catgagctggaagcctatcaaaatgaaacgatcaaatcacga-ttcactttgtttttaaa 2949
Query: 886 atgttcgccaaatata 901
||| |||||||||||
Sbjct: 2948 ttgtccgccaaatata 2933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6951
Number of Sequences: 1807
Number of extensions: 6951
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)