BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE10FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 1253 0.0
>3x_Contig1511
Length = 8569
Score = 1253 bits (632), Expect = 0.0
Identities = 763/787 (96%), Gaps = 15/787 (1%)
Strand = Plus / Plus
Query: 87 ctcgtaacattgaatcaaagtggcctggataaatttcggtgcgttggcatggacgtattc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7394 ctcgtaacattgaatcaaagtggcctggataaatttcggtgcgttggcatggacgtattc 7453
Query: 147 agaggattcacttgcttgctttataatagatagtagatattccttggagtatttgtccga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7454 agaggattcacttgcttgctttataatagatagtagatattccttggagtatttgtccga 7513
Query: 207 ttcgaatttcatgacagaatcaaacaatgatccagagagcttgtttctgaacaaagcagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 ttcgaatttcatgacagaatcaaacaatgatccagagagcttgtttctgaacaaagcagc 7573
Query: 267 gcctacggacacaccaagtgtactaccagttgatctgaaagcgtaggaaattgacgtggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 gcctacggacacaccaagtgtactaccagttgatctgaaagcgtaggaaattgacgtggt 7633
Query: 327 agcggcttggtgttcatgtggaaccgctgcaatcatggcaagaagtgtaaccgttatcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 agcggcttggtgttcatgtggaaccgctgcaatcatggcaagaagtgtaaccgttatcaa 7693
Query: 387 gacagaagatccaaagtgaggtaatgggagcaagatgtactgtctccatgtgctgatatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 gacagaagatccaaagtgaggtaatgggagcaagatgtactgtctccatgtgctgatatc 7753
Query: 447 gggcttcattagcaacacttgtagttgcccaaggaccattagaccggtaaatttcaatag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7754 gggcttcattagcaacacttgtagttgcccaaggaccattagaccggtaaatttcaatag 7813
Query: 507 gaacccgtagtaacggccagtctttttcatgtagtatccagctccgattgaaccgaacgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7814 gaacccgtagtaacggccagtctttttcatgtagtatccagctccgattgaaccgaacgc 7873
Query: 567 agtactgaagaaatttggtgcttatacg-ttacccatatctgtaggcttgagattctgaa 625
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 7874 agtactgaagaaatttggtgc-tatacgtttacccatatctgtaggcttgagattctgaa 7932
Query: 626 cgctgtaccaataaacaggtacatagaacgctagagtgacaccactcatcatacagaacc 685
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7933 cgctggaccaataaacaggtacatagaacgctagagtgacaccactcatcatacagaacc 7992
Query: 686 aattcgcgaaagatgcgcccagtatactttctgttagtcaaaaaatttgatcgggcaaga 745
||||||||||||||||||| ||||||| ||||||||||| |||||| ||||| |||||||
Sbjct: 7993 aattcgcgaaagatgcgccaagtatac-ttctgttagtc-aaaaatctgatc-ggcaaga 8049
Query: 746 tggggatcattctganatgttgagcctcaacgttaatgaaagcagtttcctgataaaata 805
| ||||||| ||||| |||| ||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 8050 t-gggatca-tctgagatgtagag-ctcaacgtaaatgaaagcag-ttcctgataaaata 8105
Query: 806 gttgcttcttactagttactttgaaaattttatctgttggtaaggaattctcttttacca 865
|||||| | ||||||| || |||||||| ||| ||||| |||||||| |||| |||||||
Sbjct: 8106 gttgctac-tactagtaac-ttgaaaatatta-ctgtt-gtaaggaa-tctc-tttacca 8159
Query: 866 cccaggg 872
|||||||
Sbjct: 8160 cccaggg 8166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4985
Number of Sequences: 1807
Number of extensions: 4985
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)