BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZE10RM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig187                                                         1067   0.0  

>3x_Contig187 
          Length = 1332

 Score = 1067 bits (538), Expect = 0.0
 Identities = 561/566 (99%), Gaps = 2/566 (0%)
 Strand = Plus / Minus

                                                                       
Query: 60  gaacaactccaaaaatatata-caacaattgccatgggatcttcagaatcctgtaaaata 118
           ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaacaactccaaaaaaaaataacaacaattgccatgggatcttcagaatcctgtaaaata 520

                                                                       
Query: 119 gctgaagaaacgttgaacgactgtgttgaagttggtggttgggtcttactacagaacatc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gctgaagaaacgttgaacgactgtgttgaagttggtggttgggtcttactacagaacatc 460

                                                                       
Query: 179 caaatgtccttgacgtggtgtaatgaaatattgccaaagtacttaaatcagattatttcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 459 caaatgtccttgacgtggtgtaatgaaatattgccaaagtacttaaagcagattatttcc 400

                                                                       
Query: 239 aatagcaacgaaaacttcaaattgtttatgacttgtagcttacaagatagcatacatcca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aatagcaacgaaaacttcaaattgtttatgacttgtagcttacaagatagcatacatcca 340

                                                                       
Query: 299 agttctcaacttttacagtatagtacgaagatagcttacgaaggcgaatctggagtatta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agttctcaacttttacagtatagtacgaagatagcttacgaaggcgaatctggagtatta 280

                                                                       
Query: 359 tacaaagtcaaaaaattctgggagctaattattcaaaagaaacccgtcgaaggaacgggc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tacaaagtcaaaaaattctgggagctaattattcaaaagaaacccgtcgaaggaacgggc 220

                                                                       
Query: 419 ttatacttaaaacacttggtctgctggatacactcgttgcttttggagcgcgtgaaaatc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttatacttaaaacacttggtctgctggatacactcgttgcttttggagcgcgtgaaaatc 160

                                                                       
Query: 479 actaccaaagacgtcgaataccatgatttagatctggagctagccattaatgcggtggaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 actaccaaagacgtcgaataccatgatttagatctggagctagccattaatgcggtggaa 100

                                                                       
Query: 539 aactgtgtcgacaatgaggcaattgattggccaaaactaagatttattgttggaaa-gct 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 99  aactgtgtcgacaatgaggcaattgattggccaaaactaagatttattgttggaaaggct 40

                                     
Query: 598 catatactgcaataggttggacaaga 623
           ||||||||||||||||||||||||||
Sbjct: 39  catatactgcaataggttggacaaga 14


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5886
Number of Sequences: 1807
Number of extensions: 5886
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)