BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE11FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1407 1598 0.0
>3x_Contig1407
Length = 9823
Score = 1598 bits (806), Expect = 0.0
Identities = 819/822 (99%), Gaps = 1/822 (0%)
Strand = Plus / Minus
Query: 86 tacttatctttgag-agttatggtactacagacgccaagatagggggaaactgtaacgat 144
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7449 tacttatctttgagcagttatggtactacagacgccaagatagggggaaactgtaacgat 7390
Query: 145 tgcaggcgttaataggatcgagtccatctaacgttgctctttgtttttcctttaaagatc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7389 tgcaggcgttaataggatcgagtccatctaacgttgctctttgtttttcctttaaagatc 7330
Query: 205 cgatatcttgcttttttccttaaagacggttccacggattttcatcactaaaaattgttt 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7329 cgatatcttgcctttttccttaaagacggttccacggattttcatcactaaaaattgttt 7270
Query: 265 taatattatatatatatatatatatcagttgacatttctatacagaattcaccacaatgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7269 taatattatatatatatatatatatcagttgacatttctatacagaattcaccacaatgg 7210
Query: 325 agatatgtacagttagcaggtcgtgaaggaatcccagaggtccgatcaggccaacacttt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7209 agatatgtacagttagcaggtcgtgaaggaatcccagaggtccgatcaggccaacacttt 7150
Query: 385 tcagtatctgtttcgggtggtacgaagtttattgctggtttcttggtgggggtcctgctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7149 tcagtatctgtttcgggtggtacgaagtttattgctggtttcttggtgggggtcctgctg 7090
Query: 445 gttgcgatggatagtcgtactaatggcgcaaggaaccgtcctgaatccaagaaatcatcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7089 gttgcgatggatagtcgtactaatggcgcaaggaaccgtcctgaatccaagaaatcatcc 7030
Query: 505 acatccgtgatacttcgaagggataaatctcaccattcattgaggaatctaactctcact 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7029 acatccgtgatacttcgaagggataaatctcaccattcattgaggaatctaactctcact 6970
Query: 565 catctcactgcaaaacaacatttcctaatagctctatgtcgtgacgtgtcattgcttccg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6969 catctcactgcaaaacaacatttcctaatagctctatgtcgtgacgtgtcattgcttccg 6910
Query: 625 cccatttttgcaatgtgtcaatcgctagcaaaggcttggtctttatcctttgaaacaaac 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6909 cccatttttgcaatgtgtcaatcgctagcaaaggcttggtctttatcctttgaaacaaac 6850
Query: 685 gttctgtatagtggctcatcgggtctaacgaataagatgaagatggcttggagcgcttat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6849 gttctgtatagtggctcatcgggtctaacgaataagatgaagatggcttggagcgcttat 6790
Query: 745 atcggtactacgactagtaccgaggatgataccattatattgagtgctttgaccacggct 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6789 atcggtactacgactagtaccgaggatgataccattatattgagtgctttgaccacggct 6730
Query: 805 agatcttctgaatattttctagcttccatgtggtgcttggtatccatgtacctctcatac 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6729 agatcttctgaatattttctagcttccatgtggtgcttggtatccatgtacctctcatac 6670
Query: 865 tcgatcttggactctctaatggttagatggattatcaagtat 906
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6669 tcgatcttggactctctaatggtaagatggattatcaagtat 6628
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,968
Number of Sequences: 1807
Number of extensions: 10968
Number of successful extensions: 1873
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)