BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE11RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1564 0.0
>3x_Contig1758
Length = 25930
Score = 1564 bits (789), Expect = 0.0
Identities = 851/864 (98%), Gaps = 6/864 (0%)
Strand = Plus / Plus
Query: 49 agcttgtagaagcggctgaaat-tatggattgtgaggtaagatgaaacggtcctgggcgt 107
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 14022 agcttgtagaagcggctgaaagatatggattgtgaggtaagatgaaacggtcctgggcgt 14081
Query: 108 ttaagccaccattaccgttgacattgacattgacaggtttcctatttccgaaactatttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14082 ttaagccaccattaccgttgacattgacattgacaggtttcctatttccgaaactatttc 14141
Query: 168 ttttcaacccgtttgtgtgttgacctggaactaaattgtcatggccaatgtt-atacttt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 14142 ttttcaacccgtttgtgtgttgacctggaactaaattgtcatggccaatgttgaaacttt 14201
Query: 227 ttctatgatgaggaggtacatacacacctgaaattcccttgtctgaacttgtggttggtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14202 ttctatgatgaggaggtacatacacacctgaaattcccttgtctgaacttgtggttggtc 14261
Query: 287 ttcttgcggaatgcgccaaagtaacatgattgtttaacgggtcgtttatgtttacatgtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14262 ttcttgcggaatgcgccaaagtaacatgattgtttaacgggtcgtttatgtttacatgtg 14321
Query: 347 aaacctgaggcgatttgaataaatcaggtaatccatgtggaccttggttgttgttaccgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14322 aaacctgaggcgatttgaataaatcaggtaatccatgtggaccttggttgttgttaccgt 14381
Query: 407 ttgcagtaagattaacagaatgcgaggattgttgagtatttatagatagatcactcatat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14382 ttgcagtaagattaacagaatgcgaggattgttgagtatttatagatagatcactcatat 14441
Query: 467 cattaatgaatccgtcgaaaccgtcactttcttccagagtaaacaaaacatcgtccagtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14442 cattaatgaatccgtcgaaaccgtcactttcttccagagtaaacaaaacatcgtccagtt 14501
Query: 527 ccggttcattatcaacggataatgcatgctgttcatgatacgtcatggtatgaataggcg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14502 ccggttcattatcaacggataatgcatgctgttcatgatacgtcatggtatgaataggcg 14561
Query: 587 gttgttcctcgtgctttgaggataaatgtggaattgatggtgacccgacatcgaatgact 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14562 gttgttcctcgtgctttgaggataaatgtggaattgatggtgacccgacatcgaatgact 14621
Query: 647 ttctggaatgtggtgggacatatttgcggtttccagtattgtcttgattgaaggagccac 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14622 ttctggaatgtggtgggacatatttgcggtttccagtattgtcttgattgaaggagccac 14681
Query: 707 gtctattgccgttatttgttgtgccgttcgtcttaagagatttcgaccactggttaaatc 766
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 14682 gtctattgccgttatttgttgtgccgttcgtcttaggagatttcgaccactggttaaatc 14741
Query: 767 tcttattc-ttttggag-aaaccccttcc-tgtaacggttatgtacactangaggtgtaa 823
|||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 14742 tcttattctttttggagaaaaccccttccatgtaacggttatgtacactaggaggtgtaa 14801
Query: 824 aataatctctcgtgttgaagtcatcgacatcatctcttgacttgtactcatggaagcagt 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 14802 aataatctctcgtgttgaagtcatcgacatcatctcttgacttgtactcatggaagaag- 14860
Query: 884 ttattattatgaatgtttggcgtt 907
|||||| ||||| |||||||||||
Sbjct: 14861 ttattaatatgagtgtttggcgtt 14884
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5682
Number of Sequences: 1807
Number of extensions: 5682
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)