BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE12FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1375 1626 0.0
>3x_Contig1375
Length = 6996
Score = 1626 bits (820), Expect = 0.0
Identities = 848/855 (99%), Gaps = 2/855 (0%)
Strand = Plus / Plus
Query: 90 gagctttcttgtttacttcagggtagtaatcatacccatttgaagcattccagacagtcg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gagctttcttgtttacttcagggtagtaatcatacccatttgaagcattccagacagtcg 989
Query: 150 tcactgaaaactaccaaaagcttatacactgttccggagctgaaaacagaggggacaagc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tcactgaaaactaccaaaagcttatacactgttccggagctgaaaacagaggggacaagc 1049
Query: 210 cccacgagtagcgaaccgaaacagaagggaaatcgattccatttgactagctcttctcat 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 cccacgagtagcgaaccgaaacagaagggaaatcgattccatttgactagctcttctcat 1109
Query: 270 cagttgttaaataccatcagaaacaagaaacaatctcaggctcaatgtctagttctaact 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 cagttgttaaataccatcagaaacaagaaacaatctcaggctcaatgtctagttctaact 1169
Query: 330 gaccagaaagatagaagggtttctgcattgagcagagtatcctctggagaacccttgagg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 gaccagaaagatagaagggtttctgcattgagcagagtatcctctggagaacccttgagg 1229
Query: 390 aaaacattttcgaatcccatcaacagatacgaataccagaagacctacgcggtacgacca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 aaaacattttcgaatcccatcaacagatacgaataccagaagacctacgcggtacgacca 1289
Query: 450 aagagttcaagtgctcgttgcataccgactgttaacaccaatagtaattcttcctcttcg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 aagagttcaagtgctcgttgcataccgactgttaacaccaatagtaattcttcctcttcg 1349
Query: 510 tcacgaaccaattctccgttagaaccagttccagctgtgataactgacttgactgctgaa 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 tcacgaaccaattctccgttagaaccagttccagctgtgataactgacttgactgctgaa 1409
Query: 570 gaaactttcaaaaagcctatcaacgagaactacacgctagagaataagttcgaaactaat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 gaaactttcaaaaagcctatcaacgagaactacacgctagagaataagttcgaaactaat 1469
Query: 630 aaatcgattgagtccatgaacaacccgagtcccatcagttcaaaccaatcaccattcact 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 aaatcgattgagtccatgaacaacccgagtcccatcagttcaaaccaatcaccattcact 1529
Query: 690 aaaggaactgcagttgaacttgctaattccataagccgacgtgattctttgaccttgaaa 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 aaaggaactgcagttgaacttgctaattccataagccgacgtgattctttgaccttgaaa 1589
Query: 750 cagttcaattctgatttgacaaacaatacgccttcaataaattatacttctagaacgcaa 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1590 cagttcaattctgatttgacaaacaatacgccttcaataaattatacttctagaacgcaa 1649
Query: 810 ttgaaattagaccatctgagagacanatcagccgaaactcgaaactctattcatgtcaca 869
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 1650 ttgaaattagaccatctgagagacaaatcagccgaaactcgaaactctattcatgcaaca 1709
Query: 870 gatgatataaatttatctgttaaaccactctgcagactccagcgttttcgaacaattcgc 929
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1710 gatgatat-aatttatctgttaaaccactctgcagactccagcg-tttcgaacaattcgc 1767
Query: 930 tatccacacagaaag 944
|||| |||||||||
Sbjct: 1768 tatcaccacagaaag 1782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6225
Number of Sequences: 1807
Number of extensions: 6225
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)