BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZE12RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1641 0.0
>3x_Contig1712
Length = 23668
Score = 1641 bits (828), Expect = 0.0
Identities = 884/898 (98%), Gaps = 5/898 (0%)
Strand = Plus / Minus
Query: 42 gcttgagagatttgacctccaatta--acgtcgtttacatcattgatgaagttcaaactg 99
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 11489 gcttgagagatttgacctccaaatacaacgtcgtttacatcattgatgaagttcaaactg 11430
Query: 100 gtgtcggtgctactggtaagttctggtgccacgaatgggctgacattcaaccaccagttg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11429 gtgtcggtgctactggtaagttctggtgccacgaatgggctgacattcaaccaccagttg 11370
Query: 160 atttggtcactttctccaagaagttccaatccgctggttactggttccacgatgttttta 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11369 atttggtcactttctccaagaagttccaatccgctggttactggttccacgatgacag-a 11311
Query: 220 ttcattcctaataaggcttacagacaattcaacacctggtgtggtgatccagctagaatg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11310 ttcattcctaataaggcttacagacaattcaacacctggtgtggtgatccagctagaatg 11251
Query: 280 attattgctggtgccattggtcaagaaatcgtagacaacaacttggtagatcaatgtgct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11250 attattgctggtgccattggtcaagaaatcgtagacaacaacttggtagatcaatgtgct 11191
Query: 340 cgtgtcggtgattacttgttcgaaaagttggaaaaattgcaagcaaaatacccaaccaga 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11190 cgtgtcggtgattacttgttcgaaaagttggaaaaattgcaagcaaaatacccaaccaga 11131
Query: 400 ttgatcaacttgagaggtaagaaccgtggtacatttatcgcttttgatttggaaacttcg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11130 ttgatcaacttgagaggtaagaaccgtggtacatttatcgcttttgatttggaaacttcg 11071
Query: 460 gctgaaagagaccagctattgaagctcttgaagagcaatggctgcaacgtcggtggttgt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11070 gctgaaagagaccagctattgaagctcttgaagagcaatggctgcaacgtcggtggttgt 11011
Query: 520 gctgaaaagtctgttagactaagaccatccttaactttcgaagaaaagcatgctgacatc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11010 gctgaaaagtctgttagactaagaccatccttaactttcgaagaaaagcatgctgacatc 10951
Query: 580 tttgtcgatgctttggaaaagtctattggccaactataaaatactgttctttcagttcct 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10950 tttgtcgatgctttggaaaagtctattggccaactataaaatactgttctttcagttcct 10891
Query: 640 catcagaacatgtatcaaaccccacacgattagtgtattcttacgtaaatagaagttatt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10890 catcagaacatgtatcaaaccccacacgattagtgtattcttacgtaaatagaagttatt 10831
Query: 700 tataagaacgcctcataattatataaaatgtgactataattattatgacagaacggattt 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10830 tataagaacgcctcataattatataaaatgtgactataattattatgacagaacggattt 10771
Query: 760 tgcttcatacaaatacatggcagtttttcaacgagccaaagcttctttgacattcaagta 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10770 tgcttcatacaaatacatggcagtttttcaacgagccaaagcttctttgacattcaagta 10711
Query: 820 tgcatgaaccttatttttctaaatggacaag-ttttcactgataaagtcaaagtgaaaaa 878
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 10710 tgcatgaaccttatttttct-aatggacaagtttttcactgataaagtcaaagtgaaaaa 10652
Query: 879 atgaaaacccattatgatggatcgttagcagttccaacaccatgaaganaggaaagtt 936
||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 10651 atgaaaaccaattatgatggatcgtaagcagttccaacaacatgaagagaggaaagtt 10594
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7701
Number of Sequences: 1807
Number of extensions: 7701
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)